2rdx: Difference between revisions

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New page: left|200px<br /><applet load="2rdx" size="450" color="white" frame="true" align="right" spinBox="true" caption="2rdx, resolution 2.00Å" /> '''Crystal structure of...
 
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[[Image:2rdx.jpg|left|200px]]<br /><applet load="2rdx" size="450" color="white" frame="true" align="right" spinBox="true"
caption="2rdx, resolution 2.00&Aring;" />
'''Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM'''<br />


==About this Structure==
==Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM==
2RDX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ism Roseovarius nubinhibens ism] with MG and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. This structure superseeds the now removed PDB entry 2QYE. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2RDX OCA].  
<StructureSection load='2rdx' size='340' side='right'caption='[[2rdx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
[[Category: Roseovarius nubinhibens ism]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2rdx]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ISM Roseovarius nubinhibens ISM]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2qye 2qye]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDX FirstGlance]. <br>
[[Category: Almo, S.C.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
[[Category: Bonanno, J.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
[[Category: Burley, S.K.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdx OCA], [https://pdbe.org/2rdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdx RCSB], [https://www.ebi.ac.uk/pdbsum/2rdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdx ProSAT]</span></td></tr>
[[Category: Gerlt, J.A.]]
</table>
[[Category: Gheyi, T.]]
== Function ==
[[Category: Gilmore, M.]]
[https://www.uniprot.org/uniprot/A3SNF8_ROSNI A3SNF8_ROSNI]  
[[Category: Koss, J.]]
== Evolutionary Conservation ==
[[Category: Lau, C.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Maletic, M.]]
Check<jmol>
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
  <jmolCheckbox>
[[Category: Ozyurt, S.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdx_consurf.spt"</scriptWhenChecked>
[[Category: Patskovsky, Y.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Sauder, J.M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Wasserman, S.R.]]
  </jmolCheckbox>
[[Category: GOL]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdx ConSurf].
[[Category: MG]]
<div style="clear:both"></div>
[[Category: enolase]]
[[Category: new york structural genomics research consortium]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgrc]]
[[Category: nysgxrc]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: racemase]]
[[Category: structural genomics]]
[[Category: unknown function]]


''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 08:56:24 2007''
==See Also==
*[[Mandelate racemase|Mandelate racemase]]
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Roseovarius nubinhibens ISM]]
[[Category: Almo SC]]
[[Category: Bonanno J]]
[[Category: Burley SK]]
[[Category: Gerlt JA]]
[[Category: Gheyi T]]
[[Category: Gilmore M]]
[[Category: Koss J]]
[[Category: Lau C]]
[[Category: Maletic M]]
[[Category: Ozyurt S]]
[[Category: Patskovsky Y]]
[[Category: Sauder JM]]
[[Category: Wasserman SR]]

Latest revision as of 12:21, 21 February 2024

Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISMCrystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM

Structural highlights

2rdx is a 8 chain structure with sequence from Roseovarius nubinhibens ISM. This structure supersedes the now removed PDB entry 2qye. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A3SNF8_ROSNI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2rdx, resolution 2.00Å

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