2aak: Difference between revisions

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[[Image:2aak.png|left|200px]]


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==UBIQUITIN CONJUGATING ENZYME FROM ARABIDOPSIS THALIANA==
The line below this paragraph, containing "STRUCTURE_2aak", creates the "Structure Box" on the page.
<StructureSection load='2aak' size='340' side='right'caption='[[2aak]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2aak]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1aak 1aak]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AAK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AAK FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2aak FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2aak OCA], [https://pdbe.org/2aak PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2aak RCSB], [https://www.ebi.ac.uk/pdbsum/2aak PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2aak ProSAT]</span></td></tr>
{{STRUCTURE_2aak| PDB=2aak |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/UBC1_ARATH UBC1_ARATH] Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.<ref>PMID:16339806</ref> <ref>PMID:8386169</ref>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/2aak_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2aak ConSurf].
<div style="clear:both"></div>


===UBIQUITIN CONJUGATING ENZYME FROM ARABIDOPSIS THALIANA===
==See Also==
 
*[[3D structures of ubiquitin conjugating enzyme|3D structures of ubiquitin conjugating enzyme]]
 
== References ==
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{{ABSTRACT_PUBMED_1321826}}
 
==About this Structure==
2AAK is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1aak 1aak]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AAK OCA].
 
==Reference==
<ref group="xtra">PMID:1321826</ref><references group="xtra"/>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Ubiquitin--protein ligase]]
[[Category: Large Structures]]
[[Category: Cook, W J.]]
[[Category: Cook WJ]]
[[Category: Jeffrey, L C.]]
[[Category: Jeffrey LC]]
[[Category: Sullivan, M L.]]
[[Category: Sullivan ML]]
[[Category: Vierstra, R D.]]
[[Category: Vierstra RD]]
[[Category: Ligase]]
[[Category: Ubiquitin conjugation]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:44:17 2009''

Latest revision as of 12:12, 14 February 2024

UBIQUITIN CONJUGATING ENZYME FROM ARABIDOPSIS THALIANAUBIQUITIN CONJUGATING ENZYME FROM ARABIDOPSIS THALIANA

Structural highlights

2aak is a 1 chain structure with sequence from Arabidopsis thaliana. This structure supersedes the now removed PDB entry 1aak. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

UBC1_ARATH Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.[1] [2]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

References

  1. ↑ Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS, Deng XW, Callis J. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiol. 2005 Dec;139(4):1597-611. PMID:16339806 doi:http://dx.doi.org/139/4/1597
  2. ↑ Sullivan ML, Vierstra RD. Formation of a stable adduct between ubiquitin and the Arabidopsis ubiquitin-conjugating enzyme, AtUBC1+. J Biol Chem. 1993 Apr 25;268(12):8777-80. PMID:8386169

2aak, resolution 2.40Å

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