1ris: Difference between revisions

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[[Image:1ris.jpg|left|200px]]


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==CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUS==
The line below this paragraph, containing "STRUCTURE_1ris", creates the "Structure Box" on the page.
<StructureSection load='1ris' size='340' side='right'caption='[[1ris]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ris]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RIS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RIS FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ris FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ris OCA], [https://pdbe.org/1ris PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ris RCSB], [https://www.ebi.ac.uk/pdbsum/1ris PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ris ProSAT]</span></td></tr>
{{STRUCTURE_1ris| PDB=1ris |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RS6_THETH RS6_THETH] Located on the outer edge of the platform on the body of the 30S subunit (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ri/1ris_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ris ConSurf].
<div style="clear:both"></div>


'''CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUS'''
==See Also==
 
*[[Ribosomal protein S6|Ribosomal protein S6]]
 
__TOC__
==Overview==
</StructureSection>
The amino acid sequence and crystal structure of the ribosomal protein S6 from the small ribosomal subunit of Thermus thermophilus have been determined. S6 is a small protein with 101 amino acid residues. The 3D structure, which was determined to 2.0 A resolution, consists of a four-stranded anti-parallel beta-sheet with two alpha-helices packed on one side. Similar folding patterns have been observed for other ribosomal proteins and may suggest an original RNA-interacting motif. Related topologies are also found in several other nucleic acid-interacting proteins and based on the assumption that the structure of the ribosome was established early in the molecular evolution, the possibility that an ancestral RNA-interacting motif in ribosomal proteins is the evolutionary origin for the nucleic acid-interacting domain in large classes of ribonucleic acid binding proteins should be considered.
[[Category: Large Structures]]
 
==About this Structure==
1RIS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RIS OCA].
 
==Reference==
Crystal structure of the ribosomal protein S6 from Thermus thermophilus., Lindahl M, Svensson LA, Liljas A, Sedelnikova SE, Eliseikina IA, Fomenkova NP, Nevskaya N, Nikonov SV, Garber MB, Muranova TA, et al., EMBO J. 1994 Mar 15;13(6):1249-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8137808 8137808]
[[Category: Single protein]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Amons, R.]]
[[Category: Amons R]]
[[Category: Eliseikina, I A.]]
[[Category: Eliseikina IA]]
[[Category: Fomenkova, N P.]]
[[Category: Fomenkova NP]]
[[Category: Garber, M B.]]
[[Category: Garber MB]]
[[Category: Liljas, A.]]
[[Category: Liljas A]]
[[Category: Lindahl, M.]]
[[Category: Lindahl M]]
[[Category: Muranova, T A.]]
[[Category: Muranova TA]]
[[Category: Nevskaya, N.]]
[[Category: Nevskaya N]]
[[Category: Nikonov, S V.]]
[[Category: Nikonov SV]]
[[Category: Rykonova, A I.]]
[[Category: Rykonova AI]]
[[Category: Sedelnikova, S E.]]
[[Category: Sedelnikova SE]]
[[Category: Svensson, L A.]]
[[Category: Svensson LA]]
[[Category: Ribosomal protein]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 07:32:53 2008''

Latest revision as of 11:23, 14 February 2024

CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUSCRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN S6 FROM THERMUS THERMOPHILUS

Structural highlights

1ris is a 1 chain structure with sequence from Thermus thermophilus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RS6_THETH Located on the outer edge of the platform on the body of the 30S subunit (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1ris, resolution 2.00Å

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