1q0s: Difference between revisions

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{{Seed}}
[[Image:1q0s.png|left|200px]]


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==Binary Structure of T4DAM with AdoHcy==
The line below this paragraph, containing "STRUCTURE_1q0s", creates the "Structure Box" on the page.
<StructureSection load='1q0s' size='340' side='right'caption='[[1q0s]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1q0s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q0S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q0S FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
{{STRUCTURE_1q0s| PDB=1q0s |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q0s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q0s OCA], [https://pdbe.org/1q0s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q0s RCSB], [https://www.ebi.ac.uk/pdbsum/1q0s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q0s ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DMA_BPT4 DMA_BPT4] This methylase recognizes the double-stranded sequence GATC, causes specific methylation on A-2 on both strands.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q0/1q0s_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q0s ConSurf].
<div style="clear:both"></div>


===Binary Structure of T4DAM with AdoHcy===
==See Also==
 
*[[DNA adenine methylase|DNA adenine methylase]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_12937411}}, adds the Publication Abstract to the page
[[Category: Escherichia virus T4]]
(as it appears on PubMed at http://www.pubmed.gov), where 12937411 is the PubMed ID number.
[[Category: Large Structures]]
-->
[[Category: Cheng X]]
{{ABSTRACT_PUBMED_12937411}}
[[Category: Dong A]]
 
[[Category: Hattman S]]
==About this Structure==
[[Category: Horton JR]]
1Q0S is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q0S OCA].
[[Category: Kossykh V]]
 
[[Category: Schlagman SL]]
==Reference==
[[Category: Yang Z]]
<ref group="xtra">PMID:12937411</ref><references group="xtra"/>
[[Category: Zhang X]]
[[Category: Enterobacteria phage t4]]
[[Category: Zhang XJ]]
[[Category: Cheng, X.]]
[[Category: Zhou L]]
[[Category: Dong, A.]]
[[Category: Hattman, S.]]
[[Category: Horton, J R.]]
[[Category: Kossykh, V.]]
[[Category: Schlagman, S L.]]
[[Category: Yang, Z.]]
[[Category: Zhang, X.]]
[[Category: Zhang, X J.]]
[[Category: Zhou, L.]]
[[Category: Methyltransferase]]
[[Category: T4dam]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:42:07 2009''

Latest revision as of 11:12, 14 February 2024

Binary Structure of T4DAM with AdoHcyBinary Structure of T4DAM with AdoHcy

Structural highlights

1q0s is a 1 chain structure with sequence from Escherichia virus T4. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.3Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DMA_BPT4 This methylase recognizes the double-stranded sequence GATC, causes specific methylation on A-2 on both strands.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1q0s, resolution 2.30Å

Drag the structure with the mouse to rotate

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