1vek: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1vek.jpg|left|200px]]<br /><applet load="1vek" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="1vek" />
-'''Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA'''<br />
-==About this Structure==
+==Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA==
-VEK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEK OCA].
+<StructureSection load='1vek' size='340' side='right'caption='[[1vek]]' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1vek]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VEK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VEK FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vek FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vek OCA], [https://pdbe.org/1vek PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vek RCSB], [https://www.ebi.ac.uk/pdbsum/1vek PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vek ProSAT], [https://www.topsan.org/Proteins/RSGI/1vek TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/UBP14_ARATH UBP14_ARATH] Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.<ref>PMID:11576424</ref> <ref>PMID:11788751</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ve/1vek_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vek ConSurf].
+<div style="clear:both"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Arabidopsis thaliana]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Abe, T.]]
+[[Category: Abe T]]
-[[Category: Higuchi, Y.]]
+[[Category: Higuchi Y]]
-[[Category: Hirota, H.]]
+[[Category: Hirota H]]
-[[Category: Kigawa, T.]]
+[[Category: Kigawa T]]
-[[Category: Koshiba, S.]]
+[[Category: Koshiba S]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Saito K]]
-[[Category: Saito, K.]]
+[[Category: Yokoyama S]]
-[[Category: Yokoyama, S.]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: structural genomics]]
-[[Category: three helix bundle]]
-[[Category: uba domain]]
-[[Category: ubiquitin associated domain]]
-[[Category: ubiquitin specific protease 14]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 15:34:26 2008''