1v4p: Difference between revisions

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[[Image:1v4p.png|left|200px]]


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==Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3==
The line below this paragraph, containing "STRUCTURE_1v4p", creates the "Structure Box" on the page.
<StructureSection load='1v4p' size='340' side='right'caption='[[1v4p]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1v4p]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4P FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
{{STRUCTURE_1v4p| PDB=1v4p |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4p OCA], [https://pdbe.org/1v4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4p RCSB], [https://www.ebi.ac.uk/pdbsum/1v4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4p ProSAT], [https://www.topsan.org/Proteins/RSGI/1v4p TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/ALAXS_PYRHO ALAXS_PYRHO] Functions in trans to edit the amino acid moiety from mischarged charged Ser-tRNA(Ala). Has little activity against Gly-tRNA(Ala).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4p_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v4p ConSurf].
<div style="clear:both"></div>


===Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3===
==See Also==
 
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1V4P is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4P OCA].
[[Category: Large Structures]]
 
==Reference==
Crystal structure of alanyl-tRNA synthetase editing-domain homolog (PH0574) from a hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 A resolution., Ishijima J, Uchida Y, Kuroishi C, Tuzuki C, Takahashi N, Okazaki N, Yutani K, Miyano M, Proteins. 2006 Mar 1;62(4):1133-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16374837 16374837]
[[Category: Alanine--tRNA ligase]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
[[Category: Ishijima, J.]]
[[Category: Ishijima J]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Yutani K]]
[[Category: Yutani, K.]]
[[Category: Alanine-trna ligase]]
[[Category: Alanyl-trna synthetase]]
[[Category: Pyrococcus horikoshii]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:21:05 2008''

Latest revision as of 02:57, 28 December 2023

Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3Crystal structure of Alanyl-tRNA Synthetase from Pyrococcus horikoshii OT3

Structural highlights

1v4p is a 3 chain structure with sequence from Pyrococcus horikoshii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.45Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

ALAXS_PYRHO Functions in trans to edit the amino acid moiety from mischarged charged Ser-tRNA(Ala). Has little activity against Gly-tRNA(Ala).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1v4p, resolution 1.45Å

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