RNA ligase: Difference between revisions
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<StructureSection load='' size='350' side='right' scene='RNA_ligase/Cv/1' caption='Se-Met RNA ligase (PDB code [[1vgj]])'> | <StructureSection load='' size='350' side='right' scene='RNA_ligase/Cv/1' caption='Se-Met RNA ligase (PDB code [[1vgj]])'> | ||
'''RNA ligase''' (LigR) is an enzyme which ligates two ribonucleotide chains using ATP and producing AMP, diphosphate and the ligated ribonucleotide chain<ref>PMID:18972386</ref>. See more details in [[T4 RNA ligase 2 (Rnl2)]] and [[Ligases]]. | '''RNA ligase''' (LigR) is an enzyme which ligates two ribonucleotide chains using ATP and producing AMP, diphosphate and the ligated ribonucleotide chain<ref>PMID:18972386</ref>. '''RNA ligase RtcB''' joins 2',3'-cyclic phosphate and 5'-OH ends<ref>PMID:21757685</ref>. See more details in [[T4 RNA ligase 2 (Rnl2)]] and [[Ligases]]. | ||
</StructureSection> | </StructureSection> | ||
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**[[2c5u]] – T4LigR 1 RNA-binding domain - Enterobacteria phage T4<br /> | **[[2c5u]] – T4LigR 1 RNA-binding domain - Enterobacteria phage T4<br /> | ||
**[[1s68]] - T4LigR 2 N-terminal<br /> | **[[1s68]] - T4LigR 2 N-terminal<br /> | ||
**[[1vgj]], [[1vdx]] – | **[[1vgj]], [[1vdx]] – PhLigR – ''Pyrococcus horikoshii''<br /> | ||
**[[8dcg]] – PhLigR RtcB <br /> | |||
**[[2vug]] – LigR – ''Pyrococcus abyssi''<br /> | **[[2vug]] – LigR – ''Pyrococcus abyssi''<br /> | ||
**[[1xdn]] – LigR 1 editing – ''Trypanosoma brucei''<br /> | **[[1xdn]] – LigR 1 editing – ''Trypanosoma brucei''<br /> | ||
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* RNA ligase complex | * RNA ligase complex | ||
**[[7p3b]] – hLigR RtcB + GMP + Co - human<br /> | |||
**[[5tt6]] – T4LigR 1 + ATP<br /> | **[[5tt6]] – T4LigR 1 + ATP<br /> | ||
**[[2hvr]], [[2hvs]] – T4LigR 2 + DNA + nucleotide <br /> | **[[2hvr]], [[2hvs]] – T4LigR 2 + DNA + nucleotide <br /> | ||
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**[[6vtf]] – aLigR + pyrophosphate<br /> | **[[6vtf]] – aLigR + pyrophosphate<br /> | ||
**[[5d1o]], [[5d1p]] – LigR ATP-dependent + ATP – ''Methanothermobacter thermautotrophicus''<br /> | **[[5d1o]], [[5d1p]] – LigR ATP-dependent + ATP – ''Methanothermobacter thermautotrophicus''<br /> | ||
**[[4isz]] – PhLigR RtcB + GTP + | **[[4isz]], [[8dc9]], [[8dca]], [[8dcb]], [[8dcd]], [[8dcf]] – PhLigR RtcB + GTP + ion<br /> | ||
**[[4dwq]], [[4it0]] – PhLigR RtcB + GMP + Mn<br /> | **[[4dwq]], [[4it0]] – PhLigR RtcB + GMP + Mn<br /> | ||
**[[4isj]], [[4dwr]] – PhLigR RtcB + Mn<br /> | **[[4isj]], [[4dwr]] – PhLigR RtcB + Mn<br /> | ||
**[[7lfq]] – PhLigR RtcB + DNA<br /> | |||
}} | }} | ||