2yy5: Difference between revisions

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{{Seed}}
[[Image:2yy5.png|left|200px]]


<!--
==Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae==
The line below this paragraph, containing "STRUCTURE_2yy5", creates the "Structure Box" on the page.
<StructureSection load='2yy5' size='340' side='right'caption='[[2yy5]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2yy5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycoplasma_pneumoniae_M129 Mycoplasma pneumoniae M129]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YY5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=WSA:5-O-[(L-TRYPTOPHYLAMINO)SULFONYL]ADENOSINE'>WSA</scene></td></tr>
{{STRUCTURE_2yy5| PDB=2yy5 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yy5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yy5 OCA], [https://pdbe.org/2yy5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yy5 RCSB], [https://www.ebi.ac.uk/pdbsum/2yy5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yy5 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yy5 TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/SYW_MYCPN SYW_MYCPN]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/2yy5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yy5 ConSurf].
<div style="clear:both"></div>


===Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae===
==See Also==
 
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2YY5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YY5 OCA].
[[Category: Large Structures]]
[[Category: Mycoplasma pneumoniae]]
[[Category: Mycoplasma pneumoniae M129]]
[[Category: Single protein]]
[[Category: Bessho Y]]
[[Category: Tryptophan--tRNA ligase]]
[[Category: Ishii T]]
[[Category: Bessho, Y.]]
[[Category: Yokoyama S]]
[[Category: Ishii, T.]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Yokoyama, S.]]
[[Category: Aminoaccyl trna synthetase]]
[[Category: Ligase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 17:16:33 2008''

Latest revision as of 12:10, 25 October 2023

Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniaeCrystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae

Structural highlights

2yy5 is a 4 chain structure with sequence from Mycoplasma pneumoniae M129. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.55Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

SYW_MYCPN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2yy5, resolution 2.55Å

Drag the structure with the mouse to rotate

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OCA
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