5ie3: Difference between revisions

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<StructureSection load='5ie3' size='340' side='right'caption='[[5ie3]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='5ie3' size='340' side='right'caption='[[5ie3]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5ie3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IE3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IE3 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5ie3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IE3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IE3 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ie2|5ie2]], [[5ie0|5ie0]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=OXD:OXALIC+ACID'>OXD</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AAE3, 4CLL10, AMPBP3, At3g48990, T2J13.170 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ie3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ie3 OCA], [https://pdbe.org/5ie3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ie3 RCSB], [https://www.ebi.ac.uk/pdbsum/5ie3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ie3 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Oxalate--CoA_ligase Oxalate--CoA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.8 6.2.1.8] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ie3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ie3 OCA], [http://pdbe.org/5ie3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ie3 RCSB], [http://www.ebi.ac.uk/pdbsum/5ie3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ie3 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/4CLLA_ARATH 4CLLA_ARATH]] Oxalyl-CoA synthetase acting exclusively against oxalate. No activity with malonate, succinate, malate, acetate, formate, lactate, glycolate, glyoxylate or glutarate. Required for oxalate degradation, normal seed development and defense against oxalate-producing fungal pathogens.<ref>PMID:22447686</ref>
[https://www.uniprot.org/uniprot/4CLLA_ARATH 4CLLA_ARATH] Oxalyl-CoA synthetase acting exclusively against oxalate. No activity with malonate, succinate, malate, acetate, formate, lactate, glycolate, glyoxylate or glutarate. Required for oxalate degradation, normal seed development and defense against oxalate-producing fungal pathogens.<ref>PMID:22447686</ref>  
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arath]]
[[Category: Arabidopsis thaliana]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Oxalate--CoA ligase]]
[[Category: Chang WR]]
[[Category: Chang, W R]]
[[Category: Fan MR]]
[[Category: Fan, M R]]
[[Category: Li M]]
[[Category: Li, M]]
[[Category: Arabidopsis]]
[[Category: Ligase]]
[[Category: Oxalate degradation]]

Latest revision as of 16:47, 30 August 2023

Crystal structure of a plant enzymeCrystal structure of a plant enzyme

Structural highlights

5ie3 is a 2 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

4CLLA_ARATH Oxalyl-CoA synthetase acting exclusively against oxalate. No activity with malonate, succinate, malate, acetate, formate, lactate, glycolate, glyoxylate or glutarate. Required for oxalate degradation, normal seed development and defense against oxalate-producing fungal pathogens.[1]

References

  1. ↑ Foster J, Kim HU, Nakata PA, Browse J. A previously unknown oxalyl-CoA synthetase is important for oxalate catabolism in Arabidopsis. Plant Cell. 2012 Mar;24(3):1217-29. doi: 10.1105/tpc.112.096032. Epub 2012 Mar, 23. PMID:22447686 doi:http://dx.doi.org/10.1105/tpc.112.096032

5ie3, resolution 1.90Å

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