DNA ligase 3D structures: Difference between revisions
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**[[4d05]] – LigD + AMP - ''Psychromonas'' <br /> | **[[4d05]] – LigD + AMP - ''Psychromonas'' <br /> | ||
**[[6nhx]], [[6nhz]] – MtLigD D + ATP - ''Mycobacterium tuberculosis'' <br /> | **[[6nhx]], [[6nhz]] – MtLigD D + ATP - ''Mycobacterium tuberculosis'' <br /> | ||
**[[2iru]] – MtLigD D polymerase domain 1-300 <br /> | |||
**[[2irx]], [[2iry]] – MtLigD D polymerase domain + GTP <br /> | |||
**[[3pky]] – MtLigD D polymerase domain + DNA + UTP <br /> | |||
**[[2r9l]], [[4mky]] – MtLigD D polymerase domain + DNA <br /> | |||
**[[6rar]], [[6ras]], [[6rce]] - PmLigD + CMP + AMP – ''Prochlorococcus marinus''<br /> | **[[6rar]], [[6ras]], [[6rce]] - PmLigD + CMP + AMP – ''Prochlorococcus marinus''<br /> | ||
**[[6rau]] - PmLigD + AMP <br /> | **[[6rau]] - PmLigD + AMP <br /> | ||
**[[7obn]] - LigD + AMP + CMP + DNA – ''Burkholderia pseudomallei<''br /> | |||
*NAD+-dependent LigD | *NAD+-dependent LigD | ||
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**[[1ta8]], [[1tae]] - EfLigD adenylation domain<br /> | **[[1ta8]], [[1tae]] - EfLigD adenylation domain<br /> | ||
**[[1zau]] - MtLigD adenylation domain <br /> | **[[1zau]] - MtLigD adenylation domain <br /> | ||
**[[3sgi]] – MtLigD (mutant) + AMP<br /> | **[[3sgi]], [[6ksc]] – MtLigD A (mutant) + AMP<br /> | ||
**[[7k72]] – MtLigD A + AMP + NAD<br /> | |||
**[[6kjm]], [[6krh]] – MtLigD A + AMP + nicotinamide ribose-MP<br /> | |||
**[[6kkv]], [[6lw8]]– MtLigD A + inhibitor<br /> | |||
**[[6ksd]] - MtLigD (mutant) + nicotinamide mononucleotide<br /> | |||
**[[6kdu]] - MtLigD (mutant) + AMP + nicotinamide mononucleotide<br /> | **[[6kdu]] - MtLigD (mutant) + AMP + nicotinamide mononucleotide<br /> | ||
**[[1v9p]], [[1dgs]] – LigD – ''Thermos filiformis''<br /> | **[[1v9p]], [[1dgs]] – LigD – ''Thermos filiformis''<br /> | ||
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**[[1l7b]] – LigD BRCT domain – ''Thermos thermophilus'' - NMR<br /> | **[[1l7b]] – LigD BRCT domain – ''Thermos thermophilus'' - NMR<br /> | ||
**[[3rr5]] – LigD - ''Thermococcus''<br /> | **[[3rr5]] – LigD - ''Thermococcus''<br /> | ||
**[[6wbo]] - LigD + AMP – ''Thermococcus gammatolerans''<br /> | |||
**[[5frq]] - LigD + DNA polymerase III subunit β – ''Helicobacter pylori''<br /> | **[[5frq]] - LigD + DNA polymerase III subunit β – ''Helicobacter pylori''<br /> | ||
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**[[1x9n]] – hLigD I + DNA + AMP + CMP – human<br /> | **[[1x9n]] – hLigD I + DNA + AMP + CMP – human<br /> | ||
**[[6p09]], [[6p0a]], [[6p0b]], [[6p0c]], [[6p0d]] - hLigD I + DNA + AMP<br /> | **[[8b8t]] - hLigD I + PCNA – Cryo EM<br /> | ||
**[[6p0e]], [[6q1v]] - hLigD I (mutant) + DNA + AMP<br /> | **[[7qnz]] - hLigD I + PCNA + DNA – Cryo EM<br /> | ||
**[[7qo1]] - hLigD I + PCNA + FEN1 + DNA – Cryo EM<br /> | |||
**[[6p09]], [[6p0a]], [[6p0b]], [[6p0c]], [[6p0d]], [[7kr3]], [[7kr4]], [[7sx5]], [[7sxe]], [[7sum]] - hLigD I + DNA + AMP<br /> | |||
**[[6p0e]], [[6q1v]], [[7l34]], [[7l35]] - hLigD I (mutant) + DNA + AMP<br /> | |||
**[[2od8]] – LigD I residues 32-53 + PCNA | **[[2od8]] – LigD I residues 32-53 + PCNA | ||
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**[[3l2p]] – hLigD III residues 257-833 + DNA<br /> | **[[3l2p]] – hLigD III residues 257-833 + DNA<br /> | ||
**[[1uw0]] - hLigD III zinc-finger domain residues 1-117 – NMR<br /> | **[[1uw0]] - hLigD III zinc-finger domain residues 1-117 – NMR<br /> | ||
**[[1imo]], [[1in1]] - hLigD III | **[[1imo]], [[1in1]] - hLigD III BRCT domain – NMR<br /> | ||
**[[3pc7]] - hLigD III | **[[3pc7]] - hLigD III BRCT domain 932-1009<br /> | ||
**[[ | **[[3qvg]] - hLigD III BRCT domain + XRCC1<br /> | ||
**[[ | **[[3pc8]] - hLigD III BRCT domain (mutant) + XRCC1<br /> | ||
*Mammalian LigD IV | *Mammalian LigD IV; Domains - catalytic 1-609; DNA-binding 1-240; adenylation 268-405; BRCT 654-911 | ||
**[[3ii6]], [[ 1ik9]] – hLigD IV C-terminal BRCT domains + DNA repair protein XRCC4<br /> | **[[3w5o]] - hLigD IV catalytic domain <br /> | ||
**[[ | **[[3ii6]], [[1ik9]] – hLigD IV C-terminal BRCT domains + DNA repair protein XRCC4<br /> | ||
**[[ | **[[2e2w]] - hLigD IV BRCT domain 654-759 - NMR<br /> | ||
**[[ | **[[3vnn]] - hLigD IV adenylation domain <br /> | ||
**[[ | **[[4hto]], [[7d9k]] - hLigD IV DNA-binding domain <br /> | ||
**[[7d9y]] - hLigD IV DNA-binding domain (mutant)<br /> | |||
**[[4htp]] - hLigD IV DNA-binding domain + artemis protein peptide<br /> | **[[4htp]] - hLigD IV DNA-binding domain + artemis protein peptide<br /> | ||
**[[3w1b]], [[3w1g]] - hLigD IV adenylation and DNA-binding domains + artemis protein peptide<br /> | **[[3w1b]], [[3w1g]] - hLigD IV adenylation and DNA-binding domains + artemis protein peptide<br /> | ||
**[[6bkg]], [[6bkf]] - hLigD IV + DNA<br /> | **[[6bkg]], [[6bkf]] - hLigD IV catalytic domain + DNA + AMP<br /> | ||
**[[7lsy]], [[7lt3]], [[7nfc]], [[7nfe]] - hLigD IV in NHEJ short-range synaptic complex – Cryo EM<br /> | |||
**[[1z56]] – LigD IV + ligase interacting factor 1 - yeast<br /> | **[[1z56]] – LigD IV + ligase interacting factor 1 - yeast<br /> | ||
Latest revision as of 12:58, 31 January 2023
3D Structures of DNA ligase3D Structures of DNA ligase
Updated on 31-January-2023