Uploads by Wayne Decatur
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 22:48, 2 September 2019 | 6ah3 labeled solid.png (file) |  |
217 KB | 6ah3 with substrate labeled. Made in PyMol by Wayne Decatur https://github.com/fomightez/pymol-binder | 1 |
| 21:50, 17 December 2018 | Fit and alone.jpg (file) |  |
840 KB | summarizes page it is on | 2 |
| 01:33, 14 December 2018 | Rpr2 snm1 1x0t rpa12FIT.pdb (file) |  |
484 KB | version of Rpr2_snm1_1x0t_rpa12.pdb where compare command was run commands determined via https://nbviewer.jupyter.org/github/fomightez/cl_demo-binder/blob/master/notebooks/GSD/GSD%201_vs_21_vs_2_vs_12.ipynb see Image:Rpr2 snm1 1x0t rpa12.pdb | 1 |
| 00:08, 5 December 2018 | Rpr2 snm1 1x0t rpa12.pdb (file) | |
485 KB | merged pdb files into multi-model using [https://github.com/fomightez/structurework/blob/master/python_scripts/merge_multi_PDBs_into_single_file.py merge_multi_PDBs_into_single_file.py] based on [https://nbviewer.jupyter.org/github/fomightez/cl_demo-binde | 1 |
| 21:05, 12 June 2017 | 5tpy cartoon.png (file) |  |
208 KB | made in Jmol from PDB file for 5tpy | 1 |
| 21:45, 18 August 2016 | 7ahlinmembraneOPM.pdb.gz (file) | |
370 KB | according to http://opm.phar.umich.edu/ "Positions of all proteins were recalculated in June 2010 using a new implicit solvent model of the lipid bilayer, PPM 2.0 (see methods)" but it seems I got this before the new ones up because what I uploaded to Pro | 4 |
| 01:07, 10 January 2016 | Layout for schematic and structure with structure.png (file) |  |
450 KB | 4 | |
| 08:24, 13 December 2014 | 4un3 labeled.png (file) |  |
657 KB | 4un3 labeled | 2 |
| 08:43, 1 March 2014 | 2KAM 6 CONVERTED.pdb (file) | |
4 KB | test | 1 |
| 07:56, 1 February 2014 | Making image with JSmol shown for vs Jmol S.png (file) |  |
211 KB | 5 | |
| 07:23, 1 February 2014 | Making image with Jmol S shown for vs JSmol.png (file) |  |
201 KB | 3 | |
| 08:35, 29 January 2014 | Jmol app permission needed toggled.png (file) |  |
36 KB | 1 | |
| 07:29, 29 January 2014 | Making image pointing at java seletion option toggled on.png (file) |  |
96 KB | 1 | |
| 07:21, 29 January 2014 | Making image pointing at java seletion option.png (file) |  |
117 KB | 2 | |
| 07:15, 29 January 2014 | Image pointing at misc.png (file) |  |
85 KB | 1 | |
| 07:04, 29 January 2014 | Mage pointing at preferences.png (file) |  |
131 KB | 1 | |
| 20:16, 1 November 2013 | Pymolcleaned1eyg.pdb (file) | |
336 KB | trying to get a working version of 1eyg for Ann Taylor's class | 1 |
| 20:10, 1 November 2013 | Pymol1kaw.pdb (file) | |
243 KB | still trying to upload a version of 1kaw that will work in Protopedia scene editor | 1 |
| 20:03, 1 November 2013 | Testupload1rpu.pdb (file) | |
361 KB | testing uploading of pdb files for use in scene editor since [1kaw] and [1eyg] have problems in scene editor | 1 |
| 19:44, 1 November 2013 | Workaround1kaw.pdb (file) | |
295 KB | uploading 1kaw try and work around an issue people are having loading this PDB file into the Scene editor the normal way | 1 |
| 06:49, 10 December 2012 | 3sn6opm.pdb.gz (file) | |
215 KB | replaced with gzipped version. | 1 |
| 06:50, 8 December 2012 | 7tm labeled.png (file) |  |
639 KB | Reverted to version as of 16:13, 28 November 2012 | 8 |
| 17:54, 13 November 2012 | 4dklopm.pdb (file) | |
520 KB | 4dkl from the [http://opm.phar.umich.edu/protein.php?pdbid=4dkl Orientations of Proteins in Membranes database] so it has lipid bi-layer boundary added and according to comments on [http://opm.phar.umich.edu/protein.php?pdbid=4dkl the page] T4 lysozyme | 1 |
| 16:58, 10 October 2012 | 3sn6opm.pdb (file) | |
1.06 MB | 3sn6 downloaded from [http://opm.phar.umich.edu/protein.php?search=3sn6 Orientations of proteins in Membranes database] so it has extracellular side and cytoplasmic side of membranes represented | 1 |
| 17:25, 8 August 2011 | 1xwd polyview3d.png (file) |  |
541 KB | made locally to add fancier rendering than Polyview3D alone gives | 4 |
| 01:37, 16 May 2011 | Kink-turn.png (file) |  |
101 KB | added blank space to the left to move it more right | 4 |
| 17:48, 14 March 2011 | VfischeriCsrA2dimer.pdb (file) | |
79 KB | model v fischeri | 1 |
| 17:30, 14 March 2011 | CsRAPDBsPLUSvfischerimodel.pdb (file) | |
380 KB | 2 | |
| 17:00, 14 March 2011 | CsRAPDBs.pdb (file) | |
302 KB | 1y00 1vpz 2bti ALL ALIGNED AND IN THAT ORDER | 1 |
| 16:41, 14 March 2011 | 1y00model1.pdb (file) | |
213 KB | just first model from 1y00 | 1 |
| 06:08, 2 March 2011 | 2cts plus overall reaction.png (file) |  |
634 KB | 4 | |
| 04:50, 2 March 2011 | CitSynReaction schematic as image.png (file) |  |
90 KB | Citrate synthase reaction scheme made to match 3D structure representation | 1 |
| 06:23, 28 February 2011 | 3ctsBIOLligHYDROGN.pdb.gz (file) | |
128 KB | 3cts biological molecue with hydrogens added to ligands by calculation | 1 |
| 07:20, 27 February 2011 | 6ctsBIOLligHYDROGNREATWATER.pdb.gz (file) | |
143 KB | 6cts with ligand hydrogens added plus reactive water has hydrogens added | 1 |
| 07:09, 27 February 2011 | 6ctsBIOLligHYDROGN.pdb.gz (file) | |
143 KB | 2 | |
| 01:59, 26 February 2011 | 5ctsBIOLligHYDROGN.pdb.gz (file) | |
142 KB | hydrogens added to ligands of biological version 5cts | 1 |
| 03:45, 21 February 2011 | Activesitea1ctsto2cts.pdb.gz (file) | |
6 KB | just active site residues with 1cts to 2cts morph | 1 |
| 23:48, 20 February 2011 | 6ctsBIOL.pdb.gz (file) | |
141 KB | 6cts biological molecule | 1 |
| 23:48, 20 February 2011 | 5ctsBIOL.pdb.gz (file) | |
140 KB | 5cts biological molecule | 1 |
| 23:47, 20 February 2011 | 3ctsBIOL.pdb.gz (file) | |
126 KB | biological molecule of 3cts | 1 |
| 04:41, 16 February 2011 | 1fl71xwdBINDINGSIM.pdb.gz (file) | |
548 KB | morph of 1fl7 (unbound FSH hormone) to 1xwd (FSH bound to receptor) | 1 |
| 04:18, 8 February 2011 | 3plaBIOL.pdb (file) | |
554 KB | Biological unit of pdb entry 3pla. Gzipped | 1 |
| 02:09, 30 January 2011 | 1lbgRibbonBorder.png (file) |  |
616 KB | 1lbg created with Jmol | 1 |
| 04:18, 19 December 2010 | 1ogscystines.png (file) |  |
408 KB | 1ogs image | 1 |
| 05:06, 25 November 2010 | 3g3a biol unitsurf.png (file) |  |
350 KB | 3g3a biological unit image made using Polyview-3D and uploaded png this time after adding label because jpg looked a bit poorer than the png | 1 |
| 04:57, 25 November 2010 | 3ciyPV3D.png (file) |  |
369 KB | 3ciy made with Polyview-3D | 1 |
| 03:47, 25 November 2010 | 1m10complexsurf.png (file) |  |
397 KB | 1m10 image made using Polyview-3D | 1 |
| 23:00, 24 November 2010 | 1id5polyview3d.png (file) |  |
387 KB | 1id5 image made using polyview-3d by me | 1 |
| 21:27, 20 November 2010 | 3g3a.pdb.gz (file) | |
51 KB | 3g3aa biological unit from PDB | 1 |
| 17:53, 16 November 2010 | GnRH III models.pdb (file) | |
38 KB | models of GnRH, specificalled lamprey III made by I TASSER site | 1 |
