Methyl CpG binding protein 3D structures

3D structures of methyl CpG binding protein3D structures of methyl CpG binding protein

Updated on 28-June-2023

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• Methyl CpG binding protein 1 (MBD1)Domains - MBD 1-77; CXXC1 – 167-222; zinc finger 330-388;
  • 6d1t – hMBD1 MBD domain + DNA – human
    
  • 1ig4 – hMBD1 MBD domain + DNA – NMR
    
  • 1d9n - hMBD1 MBD domain – NMR
    
  • 4d4w - hMBD1 CXXC1 domain – NMR
    
  • 5w9q – hMBD1 zinc finger domain + DNA
    
• Methyl CpG binding protein 2 (MBD2) or MeCP2; Domains - MBD 77-167; coiled-coil 137-178;
  • 7ao8, 7ao9, 7aoa – hMBD2 + MTA1 + HDAC1 + RBBP4 – Cryo EM
    
  • 2l2l - hMBD2 coiled-coil domain + transcriptional repressor p66-α coiled-coil domain – NMR
    
  • 6ogj, 6ogk, 6yww – hMBD2 MBD + DNA
    
  • 5bt2 – hMBD2 MBD + methylated DNA
    
  • 1qk9 - hMCP2 MBD domain – NMR
    
  • 3c2i – hMCP2 MBD domain (mutant) + DNA
    
  • 6cnp, 6cnq, 6c2f, 6c1y, 6c1v, 6c1u, 6c1t, 6c1a, 7mwk, 7mwm, 7ray – hMCP2 residues 143-220 + DNA
    
  • 8ajr, 8alq – hMCP2 residues 101-193 - NMR
    
  • 2ky8 – cMBD2 MBD domain + DNA containing cytidine and uridine derivatives - NMR - chicken
    
  • 1ub1 – cMCP2 MBD domain – NMR
    
• Methyl CpG binding protein 3 (MBD3)); Domains - MBD 1-77
  • 2mb7 – hMBD3 MBD domain – NMR
    
  • 6cev, 6ceu, 6ccg, 6cc8 – hMBD3 MBD domain + DNA
    
• Methyl CpG binding protein 4 (MBD4)); Domains – MBD 83-149; glycosylate 426-580
  • 3iho, 4e9e – hMBD4 glycosylate domain
    
  • 4e9g – hMBD4 glycosylate domain + DNA
    
  • 4dk9, 4e9f, 7kz1, 7kzg – hMBD4 glycosylate domain + DNA containing abasic dideoxyribose
    
  • 7kz0 – hMBD4 glycosylate domain + DNA containing pseudo-uridine
    
  • 4e9h, 4ea4, 4ea5 – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil
    
  • 4lg7, 2moe – hMBD4 MBD + DNA containing cytidine derivative
    
  • 5chz, 6vjw – hMBD4 MBD + DNA containing mismatch
    
  • 4ofa, 4ofe, 4ofh – hMBD4 MBD (mutant) + DNA containing mismatch
    
  • 1ngn - mMBD4 glycosylate domain – mouse
    
  • 4ew4 – mMBD4 glycosylate domain + DNA containing abasic dideoxyribose
    
  • 4evv – mMBD4 glycosylate domain + DNA containing mismatch
    
  • 4ew0 – mMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil
    
  • 3vxv, 3vxx, 3vyb, 3vyq – mMBD4 MBD + DNA containing cytidine derivative
    
• Methyl CpG binding protein 5 (MBD5)
  • 7feo – AtMBD5 MBD domain – Arabidopsis thaliana - NMR
    
• Methyl CpG binding protein 6 (MBD6)
  • 7fef – AtMBD6 101-193
    
• Methyl CpG binding protein 8 (MBD8)
  • 7d8k – AtMBD8 MBD domain - NMR
    
• Methyl CpG binding protein 11 (MBD11)
  • 6acv – AtMBD11 MBD domain - NMR