Hemagglutinin 3D structures

3D structures of hemagglutinin3D structures of hemagglutinin

Updated on 11-May-2023

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• Various hemagglutinin
  • 3aj5, 3ah1, 3ah2, 3ah4 – CbHA1 + glucoside - Clostridium botulinum
    
  • 1qxm - CbHA1 (mutant)
    
  • 3aj6 - CbHA1 (mutant) + glucoside
    
  • 2zoe, 2zs6, 4en6, 4en7, 4en8, 4en9 – CbHA3 + glucoside
    
  • 2e4m – CbHA1 + HA17
    
  • 4ouj – CbHA33 (mutant)
    
  • 4qd2 – CbHA33 + HA17 + HA70 + cadherin
    
  • 3win – CbHA1 + HA2 + HA3
    
  • 3a5p – HA I – slime mold
    
  • 4fbr – MxHA – Myxococcus xanthus
    
  • 4fbv - MxHA + glucoside
    
  • 6d7y – HA + immune protein – Pseudomonas aeruginosa
    
  • 1rwr – HA filamentous – Bordetella pertussis
    
  • 6efc – SgHA 220-453 – Streptococcus gordonii
    
  • 6efd, 6x3k – SgHA + trisaccharide
    
• Influenza hemagglutinin (IvHA)
  • 2jrd, 1ibn, 1ibo – IvHA fusion domain – NMR
    
  • 2dci, 1xoo, 1xop - IvHA fusion domain (mutant) – NMR
    
  • 6chx - IvHA head domain
    
  • 2ibx, 1ti8, 2wr0, 2wr1, 2wr2, 2wr3, 2wr4, 2wr5, 2wr7, 2wrb, 2wrc, 2wrd, 2wre, 2wrf, 2wrg, 2wrh, 3uyw, 4wa1, 4we8, 4wea, 4wsr, 6d8w, 6osr, 6ona, 6n41, 6n08, 6mzk, 6mym, 6mya, 6mxu, 5ykc, 6pcx, 6pd3, 6pd5, 6pd6, 6wxb – IvHA
    
  • 5z88, 5yt9, 5yt8, 6idd, 6iig, 6ijt, 6in5, 6kcj, 6ntf, 6p6p - IvHA (mutant)
    
  • 4we9, 4wss - IvHA + sialic acid derivative
    
  • 4f23 - IvHA precursor
    
  • 1ha0 – IvHA precursor (mutant)
    
  • 3whe, 4lvh, 6n5e, 6n5d, 6n5b, 6iuv, 6iut, 6e56, 6e4x, 6d0u, 6a4k, 6a67, 6a0z, 6oc3, 6ocb, 6p3r, 6p3s, 6pdx - IvHA + antibody
    
  • 7k37, 7k39 - IvHA 1-566 + antibody – Cryo EM
    
  • 6cnv - IvHA + envelope glycoprotein + SD84H + antibody
    
  • 6vmz - IvHA + inhibitor
    
• IvHA subunit HA1 1-340
  • 4we6, 4we7, 5xl2, 6xpo – IvHA1
    
  • 6z2t – IvHA1 49-105
    
  • 7jp4, 7rcr – IvHA1 head domain 53-335
    
  • 3qqi, 3mlh - IvHA1 receptor-binding domain
    
  • 2yp2, 2yp3, 2yp4, 2yp5, 2yp7, 2yp8, 2yp9, 3uyx, 4fiu, 5xl8 - IvHA1 (mutant)
    
  • 5xla, 5xl9 - IvHA1 (mutant) + sialic acid derivative
    
  • 4fqj, 4hkx, 4fp8, 4m5z, 5xhv, 5w0d, 5w08, 5vag, 6uig, 6ur5, 6urm, 6uyn, 6whk - IvHA1 + antibody
    
  • 2vis, 2vit - IvHA1 (mutant) + antibody
    
  • 6q0e, 6q0h, 6q0i, 6q0l, 6q0o, 6q18, 6xpr, 6xpq, 6xpx, 6xpy, 6xpz, 6xq0, 6xq2, 6xq4, 7kqg, 7kqh, 7kqi – IvHA1 head domain + antibody
    
  • 7kc1 – IvHA1 head domain + fusion protein + antibody – Cryo EM
    
• IvHA subunit HA2
  • 1qu1, 4nkj – IvHA2
    
  • 4p67, 4s1x – IvHA2 (mutant)
    
  • 4oxm – IvHA2 coiled coil
    
• IvHA subunit HA1+HA2
  • 3m5g, 3al4, 3lzg, 3m6s, 3ku3, 3ku5, 3hto, 3eyj, 3bt6, 1ru7, 1ruy, 1ruz, 1rd8, 1mql, 1htm, 2hmg, 3hmg, 4hmg, 5hmg, 1jsd, 1jsm, 3s11, 3s12, 3s13, 2ypg, 4dj6, 4dj7, 4dj8, 4bgw, 4bgz, 4bh2, 4bsa, 4bsg, 4eda, 4edb, 4h32, 4k62, 4k63, 4kdq, 4kpq, 4kps, 4fnk, 4fqm, 4k3x, 4kol, 4kth, 4lcx, 4ln3, 4ln6, 4lxv, 4m40, 4mc5, 4mhi, 4n5j, 4n5k, 4cyv, 4juk, 4jul, 4jum, 4jun, 4kw1, 4kwm, 4o5n, 4qy0, 4uo0, 4uo4, 4w8n, 4we4, 4we5, 4wst, 4wsw, 4wsx, 4xkd, 4xq5, 5cjs, 5vjk, 5tg8, 5huf, 5hu8, 5dut, 5bny, 4unz, 4uny, 4unx, 4unw, 4d00, 6d7u, 6d8b, 6d8d, 6d7c, 6bkp, 6aor, 6aoq, 5xl1, 6lks, 6nsa, 6nsb, 6ns9, 6n5a, 6n4f, 5xrt, 5xrs, 6tzb, 6v44, 6v46, 6v47, 6v48, 6v49, 6tjy, 6tva, 6tvb, 6tvc, 6tvd, 6tvf, 6zrk, 7a9d, 7jpd, 7t1v, 7wl5 - IvHA1 + HA2
    
  • 7kna - IvHA1 + HA2 – Cryo EM
    
  • 6hjn, 6hjr, 6y5g, 6y5h, 6y5i, 6y5j, 6y5k, 6y5l - IvHA1 + HA2 – Cryo EM
    
  • 4cqp, 4cqq, 4cqr, 4cqs, 4cqu, 4cqv, 4cr0, 4uo3, 4n5z, 4nrj, 4nrk, 4nrl, 3ku6, 4f3z, 4jtx, 4ju0, 4jug, 4juh, 4juj, 4k65, 4kdm, 3zpa, 4gxx, 4n5y, 5thb, 5th0, 5tgo, 4zcj, 6bko, 6bkn, 6bkm, 6aop, 5xlb, 5xl5, 5vtz, 5vtx, 5vtu, 6nsg, 6nsf, 6nsc, 6e7h, 6e7g, 6icw, 6icx, 6icy, 6id2, 6id3, 6id5, 6id8, 6id9, 6ida, 6idb, 6idz, 6tjw, 6tvr, 6tvt, 6twh, 6twi, 6tws, 6twv, 6txo, 6ty1 - IvHA1 (mutant) + HA2
    
  • 2viu, 3vun, 5thf - IvHA1 (mutant) + HA2 (mutant)
    
  • 4i78, 4m4y, 3qqb, 3qqe, 3qqo, 6nhp, 6nhq, 6nhr - IvHA1 + HA2 (mutant)
    
  • 1jsh, 1jsi, 1jsn, 1jso, 4bgx, 4bgy, 4bh0, 4bh1, 4bh3, 4bh4, 4bsb, 4bsc, 4bsd, 4bsh, 4bsi, 4jtv, 4k64, 3znk, 3znl, 3znm, 3zp0, 3zp1, 4ln4, 4ln8, 4m44, 4bse, 4bsf, 4cyw, 4cyz, 4cz0, 4n62, 4qy1, 4qy2, 4uo1, 4uo2, 4uo5, 4uo6, 4uo7, 4uo8, 4uoa, 4wa2, 4wsu, 4wsv, 4xke, 4xkf, 4xkg, 4xqo, 4xqu, 5ajm, 5tg9, 5br6, 5br3, 5br0, 5bqz, 5bqy, 4yyb, 4yya, 4yy9, 4yy7, 4yy1, 4yy0, 6bkt, 6aov, 6aou, 6aot, 6aos, 5xl4, 5xl3, 6tvs, 6wcr - IvHA1 + HA2 + sialic acid derivative
    
  • 6cf5, 6ce6 - IvHA1 + HA2 + taurine derivative
    
  • 3ubj, 3ube, 3ubn, 3ubq, 4k66, 4k67, 4kdn, 4kdo, 3zp3, 3zp2, 3zp6, 3zpb, 4cqw, 4cqx, 4cqy, 4cqz, 4uo9, 5vjm, 5vjl, 5thc, 5th1, 5tgv, 5tgu, 5e35, 5e34, 5e32, 5e30, 5e2z, 5e2y, 6bks, 6bkr, 6bkq, 5xld, 5xlc, 5xl7, 5xl6, 5vu4, 5vty, 5vtw, 5vtr, 5vtq, 5vmj, 5vmg, 5vmf, 5vmc, 5t0e, 5t0d, 5t0b, 5t08 - IvHA1 (mutant) + HA2 + sialic acid derivative
    
  • 5vtv - IvHA1 + HA2 (mutant) + sialic acid derivative
    
  • 3htp, 3htq, 3htt, 2rft, 2rfu, 1rv0, 1rvt, 1rvx, 1rvz, 1mqm, 1mqn, 1hgd, 1hge, 1hgf, 1hgg, 1hgh, 1hgi, 1hgj, 3m5h, 3m5i, 3m5j, 4kom, 4kon, 4lkg, 4lkh, 4lki, 4lkj, 4lkk, 4n60, 4n61 4n62, 4n63, 4n64 - IvHA1 + HA2 + polysaccharide
    
  • 3eyk, 3eym, 6cfg, 6cf7, 6cex - IvHA1 + HA2 + membrane-fusion inhibitor
    
  • 4eef - IvHA1 + HA2 + HA-binding protein
    
  • 3r2x – IvHA1 receptor-binding domain + HA2 fusion subunit + designed HA-binding protein
    
  • 2fk0 - IvHA14 receptor-binding domain + HA2 membrane-fusion domain
    
  • 3lzf, 3gbm, 3gbn, 3fku, 1ken, 1eo8, 1qfu, 2vir, 3sdy, 3ztj, 3ztn, 4gms, 4f15, 4hf5, 4hfu, 4hg4, 4hlz, 4kvn, 4fqi, 4fqk, 4gxu, 4fqr, 4fqv, 4fqy, 4mhh, 4mhj, 4nm8, 4o58, 4o5i, 4py8, 5c0r, 5c0s, 5cjq, 5v2a, 5umn, 5ugy, 5kaq, 5kan, 5k9q, 5k9o, 5k9k, 5jw4, 5jw3, 5ibl, 5gjt, 5gjs, 5dur, 5dup, 5dum, 5a3i, 4yk4, 4yjz, 4xrc, 4xnq, 4xnm, 4ubd, 4r8w, 6b3m, 5wko, 5w6g, 5ug0, 6nz7, 6ml8, 6ii9, 6ii8, 6ii4, 6fyw, 6fyu, 6fyt, 6e3h, 5y2m, 5y2l, 5xku, 5w42, 6wex, 6wez, 6wf0, 6wf1, 6wiz, 6wj1, 7fah, 7jix, 7u8j, 7u8l, 7u8m, 7wvd, 7wvg, 8gv4, 8gv5, 8gv6, 8gv7 - IvHA1 + HA2 + antibody
    
  • 5t6s, 5t6n - IvHA1 + HA2 + drug
    
  • 5uk2, 5uk1, 5uk0, 5ujz, 6mlm, 6hjp, 6hjq, 6wxl, 6wzt, 6xgc, 6xsk, 7 k3a, 7k3b, 7u8j, 7u8l, 7u8m, 7wvd, 7wvg, 8gv4, 8gv5, 8gv6, 8gv77u8j, 7u8l, 7u8m, 7wvd, 7wvg, 8gv4, 8gv5, 8gv6, 8gv7 - IvHA1 + HA2 + antibody – Cryo EM
    
  • 5w6u, 5w6t, 5w6r, 5w6i, 5w5u, 5w5s, 5vli - IvHA1 + HA2 + peptide
    
  • 5kuy - IvHA1 + HA2 (mutant) + polypeptide inhibitor
    
  • 7rdh - IvHA1 + HA2 + H3MB
    
• Viral hemagglutinin-neuraminidase
  • 1usx, 4fzh, 3t1e – NvHN head domain + thiosialoside – Newcastle disease virus
    
  • 1usr, 1e8t, 1e8u, 1e8v, 4fzh - NvHN head domain
    
  • 3t1e - NvHN ectodomain
    
  • 1v2i, 1v3b – hpvHN 3 – Human parainfluenza virus
    
  • 4mze – hpvPIV 3 (mutant)
    
  • 1v3c, 1v3d, 1v3e, 4wef, 4xjq, 4xjr, 4mza, 6c0m – hpvHN 3 + glucoside
    
  • 4jf7 - hpv 5 + glucoside
    
  • 5kv8, 5kv9 – hPIV + inhibitor
    
  • 4mze - hpvHN 3 (mutant) + glucoside
    
  • 3tsi – hpvHN 5 stalk domain
    
  • 1z4v, 1z4w, 1z4z, 1z50 – SvHN extracellular domain + DANA – Simian virus
    
  • 1z4x, 1z4y - SvHN extracellular domain + glucoside
    
  • 4jf7 - SvHN extracellular domain
    
  • 2vsk, 2vsm – HN ephrin-binding domain + ephrin – Hendra virus
    
  • 2vwd, 3d11 - NivHN receptor-binding domain – Nipah virus
    
  • 3d12 - NivHN receptor-binding domain + ephrin
    
  • 5b2c - MvHN - Mumps virus
    
  • 5b2d - MvHN + sialyllactose
    
  • 6jjn, 6jjm – HN – mumps rubulavirus
    
  • 6sg8 - HN – sosuga rubulavirus
    
  • 7bwu - HN – avian orthoavulavirus
    
• Measles virus hemagglutinin
  • 2rkc – MvHA extracellular domain – Measles virus
    
  • 2zb5, 2zb6 - MvHA head domain
    
  • 3alw, 3alx, 3alz – MvHA/SLAM receptor
    
  • 3inb – MvHA head domain + hMembrane cofactor protein
    
  • 1rwr – HA filamentous – Bordetella pertussis
• Dr hemagglutinin
  • 2w5p – EcDrae adhesin subunit – Escherichia coli
    
  • 1ut1 - EcDrae adhesin subunit (mutant)
    
  • 2jkj, 2jkl, 2jkn, 1usq - EcDrae adhesin subunit + chloramphenicol derivative
• Phytohemagglutinin
  • 1g8w, 1fat, 3wcr – kbPHA-L – kidney bean
    
  • 3wcs – kbPHA-L + galactose
    
• Various viral hemagglutinin
  • 1kke – RvSigma1 – human orthoreovirus
    
  • 3eoy – RvSigma1 + junctional adhesion molecule
    
  • 2aen – VP8 – human rotavirus