8sq0

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Cleaved Ycf1p Dimer in the IFwide-beta conformationCleaved Ycf1p Dimer in the IFwide-beta conformation

Structural highlights

8sq0 is a 4 chain structure with sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 3.2Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

YCFI_YEAST Cooperates for the ATP-dependent vacuolar transport of bilirubin and glutathione conjugates.[1] [2]

Publication Abstract from PubMed

Activities of ATP binding cassette (ABC) proteins are regulated by multiple mechanisms, including protein interactions, phosphorylation, proteolytic processing, and/or oligomerization of the ABC protein itself. Here we present the structure of yeast cadmium factor 1 (Ycf1p) in its mature form following cleavage by Pep4p protease. Ycf1p, a C subfamily ABC protein (ABCC), is homologue of human multidrug resistance protein 1. Remarkably, a portion of cleaved Ycf1p forms a well-ordered dimer, alongside monomeric particles also present in solution. While numerous other ABC proteins have been proposed to dimerize, no high-resolution structures have been reported. Both phosphorylation of the regulatory (R) region and ATPase activity are lower in the Ycf1p dimer compared to the monomer, indicating that dimerization affects Ycf1p function. The interface between Ycf1p protomers features protein-protein interactions and contains bound lipids, suggesting that lipids stabilize the dimer. The Ycf1p dimer structure may inform the dimerization interfaces of other ABCC dimers.

Structure of a dimeric full-length ABC transporter.,Bickers SC, Benlekbir S, Rubinstein JL, Kanelis V Nat Commun. 2024 Nov 16;15(1):9946. doi: 10.1038/s41467-024-54147-8. PMID:39550367[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Petrovic S, Pascolo L, Gallo R, Cupelli F, Ostrow JD, Goffeau A, Tiribelli C, Bruschi CV. The products of YCF1 and YLL015w (BPT1) cooperate for the ATP-dependent vacuolar transport of unconjugated bilirubin in Saccharomyces cerevisiae. Yeast. 2000 Apr;16(6):561-71. PMID:10790694 doi:<561::AID-YEA551>3.0.CO;2-L http://dx.doi.org/10.1002/(SICI)1097-0061(200004)16:6<561::AID-YEA551>3.0.CO;2-L
  2. Li ZS, Szczypka M, Lu YP, Thiele DJ, Rea PA. The yeast cadmium factor protein (YCF1) is a vacuolar glutathione S-conjugate pump. J Biol Chem. 1996 Mar 15;271(11):6509-17. PMID:8626454
  3. Bickers SC, Benlekbir S, Rubinstein JL, Kanelis V. Structure of a dimeric full-length ABC transporter. Nat Commun. 2024 Nov 16;15(1):9946. PMID:39550367 doi:10.1038/s41467-024-54147-8

8sq0, resolution 3.20Å

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OCA