8cpy

From Proteopedia
Jump to navigation Jump to search

Extended cowpea chlorotic mottle virusExtended cowpea chlorotic mottle virus

Structural highlights

8cpy is a 3 chain structure with sequence from Cowpea chlorotic mottle virus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Electron Microscopy, Resolution 3.9Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CAPSD_CCMV Capsid protein. Probably binds RNA and plays a role in packaging.[1]

Publication Abstract from PubMed

Observing proteins as they perform their tasks has largely remained elusive, which has left our understanding of protein function fundamentally incomplete. To enable such observations, we have recently proposed a technique that improves the time resolution of cryo-electron microscopy (cryo-EM) to microseconds. Here, we demonstrate that microsecond time-resolved cryo-EM enables observations of fast protein dynamics. We use our approach to elucidate the mechanics of the capsid of cowpea chlorotic mottle virus (CCMV), whose large-amplitude motions play a crucial role in the viral life cycle. We observe that a pH jump causes the extended configuration of the capsid to contract on the microsecond timescale. While this is a concerted process, the motions of the capsid proteins involve different timescales, leading to a curved reaction path. It is difficult to conceive how such a detailed picture of the dynamics could have been obtained with any other method, which highlights the potential of our technique. Crucially, our experiments pave the way for microsecond time-resolved cryo-EM to be applied to a broad range of protein dynamics that previously could not have been observed. This promises to fundamentally advance our understanding of protein function.

Fast viral dynamics revealed by microsecond time-resolved cryo-EM.,Harder OF, Barrass SV, Drabbels M, Lorenz UJ Nat Commun. 2023 Sep 13;14(1):5649. doi: 10.1038/s41467-023-41444-x. PMID:37704664[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Annamalai P, Apte S, Wilkens S, Rao AL. Deletion of highly conserved arginine-rich RNA binding motif in cowpea chlorotic mottle virus capsid protein results in virion structural alterations and RNA packaging constraints. J Virol. 2005 Mar;79(6):3277-88. PMID:15731222 doi:http://dx.doi.org/79/6/3277
  2. Harder OF, Barrass SV, Drabbels M, Lorenz UJ. Fast viral dynamics revealed by microsecond time-resolved cryo-EM. Nat Commun. 2023 Sep 13;14(1):5649. PMID:37704664 doi:10.1038/s41467-023-41444-x

8cpy, resolution 3.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA