8cf7

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Dimethylated RSL-R5 in complex with cucurbit[7]uril, C121 sheet assemblyDimethylated RSL-R5 in complex with cucurbit[7]uril, C121 sheet assembly

Structural highlights

8cf7 is a 6 chain structure with sequence from Ralstonia solanacearum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.14Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

The donut-shaped cucurbit[n]urils (Qn) are a class of rigid macrocyclic receptor with protein recognition capabilities. Qn encapsulation of amino acid side chains can enable protein assembly. Recently, cucurbit[7]uril (Q7) has been applied as a molecular glue for organizing protein building blocks into crystalline architectures. Q7 co-crystallization with dimethylated Ralstonia solanacearum lectin (RSL*) has yielded novel crystalline architectures. Co-crystallization of RSL* and Q7 yields either cage- or sheet-like architectures which may be modulated via protein engineering. However, questions remain as to the factors dictating the formation of one architecture over another (cage versus sheet). Here, we make use of an engineered RSL*-Q7 system which co-crystallizes as the cage or sheet assembly with easily-distinguished crystal morphologies. Using this model system, we probe how the crystallization conditions dictate which crystalline architecture is adopted. Protein-ligand ratios and the sodium concentration were identified as key determinants for the growth of the cage versus sheet assemblies.

Cage versus sheet: Probing the Determinants of Protein - Cucurbit[7]uril Crystalline Architectures.,Ramberg KO, Crowley PB J Struct Biol. 2023 Jun;215(2):107969. doi: 10.1016/j.jsb.2023.107969. Epub 2023 , May 1. PMID:37137399[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Ramberg KO, Crowley PB. Cage versus sheet: Probing the Determinants of Protein Crystalline Architectures. J Struct Biol. 2023 Jun;215(2):107969. PMID:37137399 doi:10.1016/j.jsb.2023.107969

8cf7, resolution 1.14Å

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OCA