8b0d

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Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB151Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with covalent inhibitor VB151

Structural highlights

8b0d is a 1 chain structure with sequence from Acidobacterium capsulatum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.62Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

C1F2K5_ACIC5

Publication Abstract from PubMed

Degradation of the extracellular matrix (ECM) supports tissue integrity and homeostasis, but is also a key factor in cancer metastasis. Heparanase (HPSE) is a mammalian ECM-remodeling enzyme with beta-D-endo-glucuronidase activity overexpressed in several malignancies, and is thought to facilitate tumor growth and metastasis. By this virtue, HPSE is considered an attractive target for the development of cancer therapies, yet to date no HPSE inhibitors have progressed to the clinic. Here we report on the discovery of glucurono-configured cyclitol derivatives featuring simple substituents at the 4-O-position as irreversible HPSE inhibitors. We show that these compounds, unlike glucurono-cyclophellitol, are selective for HPSE over beta-D-exo-glucuronidase (GUSB), also in platelet lysate. The observed selectivity is induced by steric and electrostatic interactions of the substituents at the 4-O-position. Crystallographic analysis supports this rationale for HPSE selectivity, and computer simulations provide insights in the conformational preferences and binding poses of the inhibitors, which we believe are good starting points for the future development of HPSE-targeting antimetastatic cancer drugs.

4-O-Substituted Glucuronic Cyclophellitols are Selective Mechanism-Based Heparanase Inhibitors.,Borlandelli V, Armstrong Z, Nin-Hill A, Codee JDC, Raich L, Artola M, Rovira C, Davies GJ, Overkleeft HS ChemMedChem. 2023 Feb 14;18(4):e202200580. doi: 10.1002/cmdc.202200580. Epub 2023 , Jan 24. PMID:36533564[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Borlandelli V, Armstrong Z, Nin-Hill A, Codee J, Raich L, Artola M, Rovira C, Davies G, Overkleeft HS. 4-O-Substituted Glucuronic Cyclophellitols are Selective Mechanism-Based Heparanase Inhibitors. ChemMedChem. 2022 Dec 19. doi: 10.1002/cmdc.202200580. PMID:36533564 doi:http://dx.doi.org/10.1002/cmdc.202200580

8b0d, resolution 1.62Å

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OCA