8apc

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rotational state 1c of the Trypanosoma brucei mitochondrial ATP synthase dimerrotational state 1c of the Trypanosoma brucei mitochondrial ATP synthase dimer

Structural highlights

8apc is a 18 chain structure with sequence from Trypanosoma brucei brucei. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, , , , , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

ATP5E_TRYBB Mitochondrial membrane ATP synthase (F(1)F(o) ATP synthase) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain (PubMed:19436713, PubMed:29247468). F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(o) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk (PubMed:19436713, PubMed:29247468, PubMed:29440423). During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1) (PubMed:19436713, PubMed:29440423). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits (Probable). Contrary to the procyclic, insect form that requires F(1)F(o) ATP synthase for ATP synthesis, the bloodstream form relies on ATP hydrolysis by F(1)F(o) ATP synthase to maintain its mitochondrial membrane potential (PubMed:29247468).[1] [2] [3]

Publication Abstract from PubMed

Mitochondrial ATP synthase forms stable dimers arranged into oligomeric assemblies that generate the inner-membrane curvature essential for efficient energy conversion. Here, we report cryo-EM structures of the intact ATP synthase dimer from Trypanosoma brucei in ten different rotational states. The model consists of 25 subunits, including nine lineage-specific, as well as 36 lipids. The rotary mechanism is influenced by the divergent peripheral stalk, conferring a greater conformational flexibility. Proton transfer in the lumenal half-channel occurs via a chain of five ordered water molecules. The dimerization interface is formed by subunit-g that is critical for interactions but not for the catalytic activity. Although overall dimer architecture varies among eukaryotes, we find that subunit-g together with subunit-e form an ancestral oligomerization motif, which is shared between the trypanosomal and mammalian lineages. Therefore, our data defines the subunit-g/e module as a structural component determining ATP synthase oligomeric assemblies.

An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.,Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A Nat Commun. 2022 Oct 11;13(1):5989. doi: 10.1038/s41467-022-33588-z. PMID:36220811[4]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Zikova A, Schnaufer A, Dalley RA, Panigrahi AK, Stuart KD. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009 May;5(5):e1000436. doi: 10.1371/journal.ppat.1000436. Epub 2009, May 15. PMID:19436713 doi:http://dx.doi.org/10.1371/journal.ppat.1000436
  2. Gahura O, Subrtova K, Vachova H, Panicucci B, Fearnley IM, Harbour ME, Walker JE, Zikova A. The F1 -ATPase from Trypanosoma brucei is elaborated by three copies of an additional p18-subunit. FEBS J. 2018 Feb;285(3):614-628. doi: 10.1111/febs.14364. Epub 2017 Dec 30. PMID:29247468 doi:http://dx.doi.org/10.1111/febs.14364
  3. Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE. ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423 doi:http://dx.doi.org/10.1073/pnas.1720940115
  4. Gahura O, Muhleip A, Hierro-Yap C, Panicucci B, Jain M, Hollaus D, Slapnickova M, Zikova A, Amunts A. An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases. Nat Commun. 2022 Oct 11;13(1):5989. doi: 10.1038/s41467-022-33588-z. PMID:36220811 doi:http://dx.doi.org/10.1038/s41467-022-33588-z

8apc, resolution 3.50Å

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OCA