7skf

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Myocilin OLF mutant A445VMyocilin OLF mutant A445V

Structural highlights

7skf is a 1 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.282Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Accurate predictions of the pathogenicity of mutations associated with genetic diseases are key to the success of precision medicine. Inherited missense mutations in the myocilin (MYOC) gene, within its olfactomedin (OLF) domain, constitute the strongest genetic link to primary open-angle glaucoma via a toxic gain of function, and thus MYOC is an attractive precision-medicine target. However, not all mutations in MYOC cause glaucoma, and common variants are expected to be neutral polymorphisms. The Genome Aggregation Database (gnomAD) lists approximately 100 missense variants documented within OLF, all of which are relatively rare (allele frequency <0.001%) and nearly all are of unknown pathogenicity. To distinguish disease-causing OLF variants from benign OLF variants, we first characterized the most prevalent population-based variants using a suite of cellular and biophysical assays, and identified two variants with features of aggregation-prone familial disease variants. Next, we considered all available biochemical and clinical data to demonstrate that pathogenic and benign variants can be differentiated statistically based on a single metric: the thermal stability of OLF. Our results motivate genotyping MYOC in patients for clinical monitoring of this widespread, painless and irreversible ocular disease.

Quantitative differentiation of benign and misfolded glaucoma-causing myocilin variants on the basis of protein thermal stability.,Scelsi HF, Hill KR, Barlow BM, Martin MD, Lieberman RL Dis Model Mech. 2023 Jan 1;16(1):dmm049816. doi: 10.1242/dmm.049816. Epub 2023 , Jan 13. PMID:36579626[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Scelsi HF, Hill KR, Barlow BM, Martin MD, Lieberman RL. Disambiguation of benign and misfolded glaucoma-causing myocilin variants on the basis of protein thermal stability. Dis Model Mech. 2022 Dec 29:dmm.049816. doi: 10.1242/dmm.049816. PMID:36579626 doi:http://dx.doi.org/10.1242/dmm.049816

7skf, resolution 1.28Å

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OCA