7kns

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Cryo-EM structure of jack bean ureaseCryo-EM structure of jack bean urease

Structural highlights

7kns is a 6 chain structure with sequence from Canavalia ensiformis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Activity:Urease, with EC number 3.5.1.5
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

The resolution of cryo-EM reconstructions is fundamentally limited by the Nyquist frequency, which is half the sampling frequency of the detector and depends upon the magnification used. In principle, super-resolution imaging should enable reconstructions to surpass the physical Nyquist limit by increasing sampling frequency, yet there are few reports of reconstructions that do so. Here we directly examine the contribution of super-resolution information, obtained with the K3 direct electron detector using a 2-condenser microscope, to single-particle cryo-EM reconstructions surpassing the physical Nyquist limit. We also present a comparative analysis of a sample imaged at four different magnifications. This analysis demonstrates that lower magnifications can be beneficial, despite the loss of higher resolution signal, due to the increased number of particle images obtained. To highlight the potential utility of lower magnification data collection, we produced a 3.5 A reconstruction of jack bean urease with particles from a single micrograph.

Experimental evaluation of super-resolution imaging and magnification choice in single-particle cryo-EM.,Feathers JR, Spoth KA, Fromme JC J Struct Biol X. 2021 Mar 13;5:100047. doi: 10.1016/j.yjsbx.2021.100047., eCollection 2021. PMID:33817625[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Feathers JR, Spoth KA, Fromme JC. Experimental evaluation of super-resolution imaging and magnification choice in single-particle cryo-EM. J Struct Biol X. 2021 Mar 13;5:100047. doi: 10.1016/j.yjsbx.2021.100047., eCollection 2021. PMID:33817625 doi:http://dx.doi.org/10.1016/j.yjsbx.2021.100047

7kns, resolution 2.77Å

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OCA