7eqh

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Crystal structure of Arabidopsis GUN2/HO1 in complex with hemeCrystal structure of Arabidopsis GUN2/HO1 in complex with heme

Structural highlights

7eqh is a 2 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

HMOX1_ARATH Key enzyme in the synthesis of the chromophore of the phytochrome family of plant photoreceptors. Catalyzes the opening of the heme ring to form the open-chain tetrapyrrole biliverdin IX with the release of iron and carbon monoxide (CO). Produces specifically the biliverdin IX-alpha isomer. Can form complex with heme, is ferredoxin-dependent and its activity is increased in the presence of ascorbate. Plays a role in salt acclimation signaling. May affect the plastid-to-nucleus signaling pathway by perturbing tetrapyrrole synthesis. The plastid-to-nucleus signal plays an important role in the coordinated expression of both nuclear- and chloroplast-localized genes that encode photosynthesis-related proteins.[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12]

Publication Abstract from PubMed

Arabidopsis thaliana heme oxygenase-1 (AtHO-1), a metabolic enzyme in the heme degradation pathway, serves as a prototype for study of the bilin-related functions in plants. Past biological analyses revealed that AtHO-1 requires ferredoxin-NADP(+) reductase (FNR) and ferredoxin for its enzymatic activity. Here, we characterized the binding and degradation of heme by AtHO-1, and found that ferredoxin is a dispensable component of the reducing system that provides electrons for heme oxidation. Furthermore, we reported the crystal structure of heme-bound AtHO-1, which demonstrates both conserved and previously undescribed features of plant heme oxygenases. Finally, the electron transfer pathway from FNR to AtHO-1 is suggested based on the known structural information.

Enzymological and structural characterization of Arabidopsis thaliana heme oxygenase-1.,Wang J, Li X, Chang JW, Ye T, Mao Y, Wang X, Liu L FEBS Open Bio. 2022 Sep;12(9):1677-1687. doi: 10.1002/2211-5463.13453. Epub 2022 , Jun 20. PMID:35689519[13]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Muramoto T, Kohchi T, Yokota A, Hwang I, Goodman HM. The Arabidopsis photomorphogenic mutant hy1 is deficient in phytochrome chromophore biosynthesis as a result of a mutation in a plastid heme oxygenase. Plant Cell. 1999 Mar;11(3):335-48. doi: 10.1105/tpc.11.3.335. PMID:10072395 doi:http://dx.doi.org/10.1105/tpc.11.3.335
  2. Davis SJ, Kurepa J, Vierstra RD. The Arabidopsis thaliana HY1 locus, required for phytochrome-chromophore biosynthesis, encodes a protein related to heme oxygenases. Proc Natl Acad Sci U S A. 1999 May 25;96(11):6541-6. doi: , 10.1073/pnas.96.11.6541. PMID:10339624 doi:http://dx.doi.org/10.1073/pnas.96.11.6541
  3. Vinti G, Hills A, Campbell S, Bowyer JR, Mochizuki N, Chory J, Lopez-Juez E. Interactions between hy1 and gun mutants of Arabidopsis, and their implications for plastid/nuclear signalling. Plant J. 2000 Dec;24(6):883-94. doi: 10.1046/j.1365-313x.2000.00936.x. PMID:11135121 doi:http://dx.doi.org/10.1046/j.1365-313x.2000.00936.x
  4. Mochizuki N, Brusslan JA, Larkin R, Nagatani A, Chory J. Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):2053-8. PMID:11172074 doi:http://dx.doi.org/10.1073/pnas.98.4.2053
  5. Neff MM, Van Volkenburgh E. Light-Stimulated Cotyledon Expansion in Arabidopsis Seedlings (The Role of Phytochrome B). Plant Physiol. 1994 Mar;104(3):1027-1032. doi: 10.1104/pp.104.3.1027. PMID:12232145 doi:http://dx.doi.org/10.1104/pp.104.3.1027
  6. Parks BM, Quail PH. Phytochrome-Deficient hy1 and hy2 Long Hypocotyl Mutants of Arabidopsis Are Defective in Phytochrome Chromophore Biosynthesis. Plant Cell. 1991 Nov;3(11):1177-1186. doi: 10.1105/tpc.3.11.1177. PMID:12324588 doi:http://dx.doi.org/10.1105/tpc.3.11.1177
  7. Muramoto T, Tsurui N, Terry MJ, Yokota A, Kohchi T. Expression and biochemical properties of a ferredoxin-dependent heme oxygenase required for phytochrome chromophore synthesis. Plant Physiol. 2002 Dec;130(4):1958-66. doi: 10.1104/pp.008128. PMID:12481078 doi:http://dx.doi.org/10.1104/pp.008128
  8. Emborg TJ, Walker JM, Noh B, Vierstra RD. Multiple heme oxygenase family members contribute to the biosynthesis of the phytochrome chromophore in Arabidopsis. Plant Physiol. 2006 Mar;140(3):856-68. doi: 10.1104/pp.105.074211. Epub 2006 Jan , 20. PMID:16428602 doi:http://dx.doi.org/10.1104/pp.105.074211
  9. Gisk B, Yasui Y, Kohchi T, Frankenberg-Dinkel N. Characterization of the haem oxygenase protein family in Arabidopsis thaliana reveals a diversity of functions. Biochem J. 2010 Jan 15;425(2):425-34. doi: 10.1042/BJ20090775. PMID:19860740 doi:http://dx.doi.org/10.1042/BJ20090775
  10. Gisk B, Bregier F, Kruger RA, Broring M, Frankenberg-Dinkel N. Enzymatic ring opening of an iron corrole by plant-type heme oxygenases: unexpected substrate and protein selectivities. Biochemistry. 2010 Nov 30;49(47):10042-4. doi: 10.1021/bi1014369. Epub 2010 Nov , 3. PMID:20979354 doi:http://dx.doi.org/10.1021/bi1014369
  11. Xie YJ, Xu S, Han B, Wu MZ, Yuan XX, Han Y, Gu Q, Xu DK, Yang Q, Shen WB. Evidence of Arabidopsis salt acclimation induced by up-regulation of HY1 and the regulatory role of RbohD-derived reactive oxygen species synthesis. Plant J. 2011 Apr;66(2):280-92. doi: 10.1111/j.1365-313X.2011.04488.x. Epub 2011 , Feb 18. PMID:21205037 doi:http://dx.doi.org/10.1111/j.1365-313X.2011.04488.x
  12. Susek RE, Ausubel FM, Chory J. Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. Cell. 1993 Sep 10;74(5):787-99. doi: 10.1016/0092-8674(93)90459-4. PMID:7690685 doi:http://dx.doi.org/10.1016/0092-8674(93)90459-4
  13. Wang J, Li X, Chang JW, Ye T, Mao Y, Wang X, Liu L. Enzymological and structural characterization of Arabidopsis thaliana heme oxygenase-1. FEBS Open Bio. 2022 Sep;12(9):1677-1687. doi: 10.1002/2211-5463.13453. Epub 2022 , Jun 20. PMID:35689519 doi:http://dx.doi.org/10.1002/2211-5463.13453

7eqh, resolution 2.20Å

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