7b9k

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Cryo-EM structure of the dihydrolipoyl transacetylase cubic core of the E. coli pyruvate dehydrogenase complex including lipoyl domainsCryo-EM structure of the dihydrolipoyl transacetylase cubic core of the E. coli pyruvate dehydrogenase complex including lipoyl domains

Structural highlights

7b9k is a 24 chain structure with sequence from Ecoli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Activity:Dihydrolipoyllysine-residue acetyltransferase, with EC number 2.3.1.12
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[ODP2_ECOLI] The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Publication Abstract from PubMed

The pyruvate dehydrogenase complex (PDHc) links glycolysis to the citric acid cycle by converting pyruvate into acetyl-coenzyme A. PDHc encompasses three enzymatically active subunits, namely pyruvate dehydrogenase, dihydrolipoyl transacetylase, and dihydrolipoyl dehydrogenase. Dihydrolipoyl transacetylase is a multidomain protein comprising a varying number of lipoyl domains, a peripheral subunit-binding domain, and a catalytic domain. It forms the structural core of the complex, provides binding sites for the other enzymes, and shuffles reaction intermediates between the active sites through covalently bound lipoyl domains. The molecular mechanism by which this shuttling occurs has remained elusive. Here, we report a cryo-EM reconstruction of the native E. coli dihydrolipoyl transacetylase core in a resting state. This structure provides molecular details of the assembly of the core and reveals how the lipoyl domains interact with the core at the active site.

Structure of the native pyruvate dehydrogenase complex reveals the mechanism of substrate insertion.,Skerlova J, Berndtsson J, Nolte H, Ott M, Stenmark P Nat Commun. 2021 Sep 6;12(1):5277. doi: 10.1038/s41467-021-25570-y. PMID:34489474[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Skerlova J, Berndtsson J, Nolte H, Ott M, Stenmark P. Structure of the native pyruvate dehydrogenase complex reveals the mechanism of substrate insertion. Nat Commun. 2021 Sep 6;12(1):5277. doi: 10.1038/s41467-021-25570-y. PMID:34489474 doi:http://dx.doi.org/10.1038/s41467-021-25570-y

7b9k, resolution 3.16Å

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OCA