6lsq

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Crystal structure of Echistatin, an RGD-containing short disintegrinCrystal structure of Echistatin, an RGD-containing short disintegrin

Structural highlights

Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Echistatin (Ech) is a short disintegrin with a long (42)NPHKGPAT C-terminal tail. We determined the 3-D structure of Ech by X-ray crystallography. Superimposition of the structures of chains A and B showed conformational differences in their RGD loops and C-termini. The chain A structure is consistent with our NMR analysis that the GPAT residues of the C-terminus cannot be observed due to high flexibility. The hydrogen bond patterns of the RGD loop and between the RGD loop and C-terminus in Ech were the same as those of the corresponding residues in medium disintegrins. The mutant with C-terminal HKGPAT truncation caused 6.4-, 7.0-, 11.7-, and 18.6-fold decreases in inhibiting integrins alphavbeta3, alphaIIbbeta3, alphavbeta5, and alpha5beta1. Mutagenesis of the C-terminus showed that the H44A mutant caused 2.5- and 4.4-fold increases in inhibiting alphaIIbbeta3 and alpha5beta1, and the K45A mutant caused a 2.6-fold decrease in inhibiting alphaIIbbeta3. We found that Ech inhibited VEGF-induced HUVEC proliferation with an IC50 value of 103.2 nM and inhibited the migration of A375, U373MG, and Panc-1 tumor cells with IC50 values of 1.5, 5.7, and 154.5 nM. These findings suggest that Ech is a potential anticancer agent, and its C-terminal region can be optimized to improve its anticancer activity.

Structural Insight into Integrin Recognition and Anticancer Activity of Echistatin.,Chen YC, Chang YT, Chen CY, Shiu JH, Cheng CH, Huang CH, Chen JF, Chuang WJ Toxins (Basel). 2020 Nov 9;12(11). pii: toxins12110709. doi:, 10.3390/toxins12110709. PMID:33182321[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Chen YC, Chang YT, Chen CY, Shiu JH, Cheng CH, Huang CH, Chen JF, Chuang WJ. Structural Insight into Integrin Recognition and Anticancer Activity of Echistatin. Toxins (Basel). 2020 Nov 9;12(11):709. PMID:33182321 doi:10.3390/toxins12110709

6lsq, resolution 1.80Å

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