6d8m

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Group I self-splicing intron P4-P6 domain mutant A125U/G126UGroup I self-splicing intron P4-P6 domain mutant A125U/G126U

Structural highlights

6d8m is a 2 chain structure with sequence from Tetrahymena thermophila. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.7Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Crystallography is a major technique for determining large RNA structures. Obtaining diffraction-quality crystals has been the bottleneck. Although several RNA crystallization methods have been developed, the field strongly needs additional approaches. Here we invented an in crystallo selection strategy for identifying mutations that enhance a target RNA's crystallizability. The strategy includes constructing an RNA pool containing random mutations, obtaining crystals, and amplifying the sequences enriched by crystallization. We demonstrated a proof-of-principle application to the P4-P6 domain from the Tetrahymena ribozyme. We further determined the structures of four selected mutants. All four establish new crystal lattice contacts while maintaining the native structure. Three mutants achieve this by relocating bulges and one by making a helix more flexible. In crystallo selection provides opportunities to improve crystals of RNAs or RNA-ligand complexes. Our results also suggest that mutants may be rationally designed for crystallization by "walking" a bulge along the RNA chain.

In Crystallo Selection to Establish New RNA Crystal Contacts.,Shoffner GM, Wang R, Podell E, Cech TR, Guo F Structure. 2018 May 28. pii: S0969-2126(18)30169-2. doi:, 10.1016/j.str.2018.05.005. PMID:29910185[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Shoffner GM, Wang R, Podell E, Cech TR, Guo F. In Crystallo Selection to Establish New RNA Crystal Contacts. Structure. 2018 May 28. pii: S0969-2126(18)30169-2. doi:, 10.1016/j.str.2018.05.005. PMID:29910185 doi:http://dx.doi.org/10.1016/j.str.2018.05.005

6d8m, resolution 3.70Å

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OCA