6b58

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FrdA-SdhE assembly intermediateFrdA-SdhE assembly intermediate

Structural highlights

6b58 is a 4 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.611Å
Ligands:, , , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FRDA_ECOLI Two distinct, membrane-bound, FAD-containing enzymes are responsible for the catalysis of fumarate and succinate interconversion; the fumarate reductase is used in anaerobic growth, and the succinate dehydrogenase is used in aerobic growth.

Publication Abstract from PubMed

Flavin is covalently attached to the protein scaffold in ~10% of flavoenzymes. However, the mechanism of covalent modification is unclear, due in part to challenges in stabilizing assembly intermediates. Here, we capture the structure of an assembly intermediate of the Escherichia coli Complex II (quinol:fumarate reductase (FrdABCD)). The structure contains the E. coli FrdA subunit bound to covalent FAD and crosslinked with its assembly factor, SdhE. The structure contains two global conformational changes as compared to prior structures of the mature protein: the rotation of a domain within the FrdA subunit, and the destabilization of two large loops of the FrdA subunit, which may create a tunnel to the active site. We infer a mechanism for covalent flavinylation. As supported by spectroscopic and kinetic analyses, we suggest that SdhE shifts the conformational equilibrium of the FrdA active site to disfavor succinate/fumarate interconversion and enhance covalent flavinylation.

Crystal structure of an assembly intermediate of respiratory Complex II.,Sharma P, Maklashina E, Cecchini G, Iverson TM Nat Commun. 2018 Jan 18;9(1):274. doi: 10.1038/s41467-017-02713-8. PMID:29348404[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Sharma P, Maklashina E, Cecchini G, Iverson TM. Crystal structure of an assembly intermediate of respiratory Complex II. Nat Commun. 2018 Jan 18;9(1):274. doi: 10.1038/s41467-017-02713-8. PMID:29348404 doi:http://dx.doi.org/10.1038/s41467-017-02713-8

6b58, resolution 2.61Å

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OCA