4yd9

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Crystal structure of squid hemocyaninCrystal structure of squid hemocyanin

Structural highlights

4yd9 is a 30 chain structure with sequence from Todarodes pacificus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Molluscan hemocyanin, a copper-containing oxygen transporter, is one of the largest known proteins. Although molluscan hemocyanins are currently applied as immunotherapeutic agents, their precise structure has not been determined because of their enormous size. Here, we have determined the first X-ray crystal structure of intact molluscan hemocyanin. The structure unveiled the architecture of the 3.8-MDa supermolecule composed of homologous functional units (FUs), wherein the dimers of FUs hierarchically associated to form the entire cylindrical decamer. Most of the specific inter-FU interactions were localized at narrow regions in the FU dimers, suggesting that rigid FU dimers formed by specific interactions assemble with flexibility. Furthermore, the roles of carbohydrates in assembly and allosteric effect, and conserved sulfur-containing residues in copper incorporation, were revealed. The precise structural information obtained in this study will accelerate our understanding of the molecular basis of hemocyanin and its future applications.

Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 A Resolution.,Gai Z, Matsuno A, Kato K, Kato S, Khan MR, Shimizu T, Yoshioka T, Kato Y, Kishimura H, Kanno G, Miyabe Y, Terada T, Tanaka Y, Yao M Structure. 2015 Dec 1;23(12):2204-12. doi: 10.1016/j.str.2015.09.008. Epub 2015, Oct 22. PMID:26602184[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Gai Z, Matsuno A, Kato K, Kato S, Khan MR, Shimizu T, Yoshioka T, Kato Y, Kishimura H, Kanno G, Miyabe Y, Terada T, Tanaka Y, Yao M. Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 A Resolution. Structure. 2015 Dec 1;23(12):2204-12. doi: 10.1016/j.str.2015.09.008. Epub 2015, Oct 22. PMID:26602184 doi:http://dx.doi.org/10.1016/j.str.2015.09.008

4yd9, resolution 3.00Å

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OCA