4v2k

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Crystal structure of the thiosulfate dehydrogenase TsdA in complex with thiosulfateCrystal structure of the thiosulfate dehydrogenase TsdA in complex with thiosulfate

Structural highlights

4v2k is a 1 chain structure with sequence from Allochromatium vinosum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.29Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TSDA_ALLVD Catalyzes the oxidation of 2 molecules of thiosulfate to tetrathionate.[1] [2]

Publication Abstract from PubMed

Thiosulfate dehydrogenase (TsdA) catalyzes the oxidation of two thiosulfate molecules to form tetrathionate and is predicted to use an unusual cysteine-ligated heme as the catalytic cofactor. We have determined the structure of Allochromatium vinosum TsdA to a resolution of 1.3 A. This structure confirms the active site heme ligation, identifies a thiosulfate binding site within the active site cavity, and reveals an electron transfer route from the catalytic heme, through a second heme group to the external electron acceptor. We provide multiple lines of evidence that the catalytic reaction proceeds through the intermediate formation of a S-thiosulfonate derivative of the heme cysteine ligand: the cysteine is reactive and is accessible to electrophilic attack; cysteine S-thiosulfonate is formed by the addition of thiosulfate or following the reverse reaction with tetrathionate; the S-thiosulfonate modification is removed through catalysis; and alkylating the cysteine blocks activity. Active site amino acid residues required for catalysis were identified by mutagenesis and are inferred to also play a role in stabilizing the S-thiosulfonate intermediate. The enzyme SoxAX, which catalyzes the first step in the bacterial Sox thiosulfate oxidation pathway, is homologous to TsdA and can be inferred to use a related catalytic mechanism.

Mechanism of thiosulfate oxidation in the SoxA family of cysteine-ligated cytochromes.,Grabarczyk DB, Chappell PE, Eisel B, Johnson S, Lea SM, Berks BC J Biol Chem. 2015 Apr 3;290(14):9209-21. doi: 10.1074/jbc.M114.618025. Epub 2015 , Feb 11. PMID:25673696[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Hensen D, Sperling D, Truper HG, Brune DC, Dahl C. Thiosulphate oxidation in the phototrophic sulphur bacterium Allochromatium vinosum. Mol Microbiol. 2006 Nov;62(3):794-810. Epub 2006 Sep 21. PMID:16995898 doi:http://dx.doi.org/10.1111/j.1365-2958.2006.05408.x
  2. Denkmann K, Grein F, Zigann R, Siemen A, Bergmann J, van Helmont S, Nicolai A, Pereira IA, Dahl C. Thiosulfate dehydrogenase: a widespread unusual acidophilic c-type cytochrome. Environ Microbiol. 2012 Oct;14(10):2673-88. doi:, 10.1111/j.1462-2920.2012.02820.x. Epub 2012 Jul 11. PMID:22779704 doi:http://dx.doi.org/10.1111/j.1462-2920.2012.02820.x
  3. Grabarczyk DB, Chappell PE, Eisel B, Johnson S, Lea SM, Berks BC. Mechanism of thiosulfate oxidation in the SoxA family of cysteine-ligated cytochromes. J Biol Chem. 2015 Apr 3;290(14):9209-21. doi: 10.1074/jbc.M114.618025. Epub 2015 , Feb 11. PMID:25673696 doi:http://dx.doi.org/10.1074/jbc.M114.618025

4v2k, resolution 1.29Å

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