3vvt

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Crystal structure of reconstructed archaeal ancestral NDK, Arc1Crystal structure of reconstructed archaeal ancestral NDK, Arc1

Structural highlights

3vvt is a 2 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Theoretical studies have focused on the environmental temperature of the universal common ancestor of life with conflicting conclusions. Here we provide experimental support for the existence of a thermophilic universal common ancestor. We present the thermal stabilities and catalytic efficiencies of nucleoside diphosphate kinases (NDK), designed using the information contained in predictive phylogenetic trees, that seem to represent the last common ancestors of Archaea and of Bacteria. These enzymes display extreme thermal stabilities, suggesting thermophilic ancestries for Archaea and Bacteria. The results are robust to the uncertainties associated with the sequence predictions and to the tree topologies used to infer the ancestral sequences. Moreover, mutagenesis experiments suggest that the universal ancestor also possessed a very thermostable NDK. Because, as we show, the stability of an NDK is directly related to the environmental temperature of its host organism, our results indicate that the last common ancestor of extant life was a thermophile that flourished at a very high temperature.

Experimental evidence for the thermophilicity of ancestral life.,Akanuma S, Nakajima Y, Yokobori S, Kimura M, Nemoto N, Mase T, Miyazono K, Tanokura M, Yamagishi A Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11067-72. doi:, 10.1073/pnas.1308215110. Epub 2013 Jun 17. PMID:23776221[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Akanuma S, Nakajima Y, Yokobori S, Kimura M, Nemoto N, Mase T, Miyazono K, Tanokura M, Yamagishi A. Experimental evidence for the thermophilicity of ancestral life. Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11067-72. doi:, 10.1073/pnas.1308215110. Epub 2013 Jun 17. PMID:23776221 doi:10.1073/pnas.1308215110

3vvt, resolution 2.40Å

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