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User:Michael Strong/H1N1/NS2/MSA

< User:Michael Strong‎ | H1N1
Revision as of 21:24, 15 May 2009 by Michael Strong (talk | contribs) (New page: == H1N1 Swine Flu Multiple Sequence Alignment of NS2 Protein, 53 sequences== {| class="wikitable" |Protein |Polymorphism |Strain with Polymorphism |Number of Strains with Polymorphism |--...)
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H1N1 Swine Flu Multiple Sequence Alignment of NS2 Protein, 53 sequencesH1N1 Swine Flu Multiple Sequence Alignment of NS2 Protein, 53 sequences

Protein Polymorphism Strain with Polymorphism Number of Strains with Polymorphism
NS2 E63K 229783374_A/Korea/01/2009 1
NS2 E67K 229598887_A/Texas/15/2009 1
NS2 A89E 228017754_A/California/06/2 3
NS2 A115T 229892755_A/Canada-NS/RV153 1 
gi|229299513_A/Texas/05/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229368685_A/Denmark/513/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227831790_A/Texas/05/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229299533_A/Texas/04/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977168_A/California/07/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977144_A/California/07/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977112_A/California/04/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227809840_A/California/04/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977156_A/California/08/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|227977124_A/California/08/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396499_A/Ohio/07/2009         MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536008_A/Kansas/03/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396476_A/New_York/19/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396461_A/Texas/06/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396401_A/New_York/31/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396412_A/New_York/23/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396386_A/New_York/18/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396448_A/New_York/15/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396350_A/New_York/12/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396372_A/New_York/11/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396432_A/New_York/10/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229396362_A/New_York/06/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229484057_A/Mexico/InDRE448      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229484060_A/Canada-ON/RV152      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229484055_A/Canada-NS/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462704_A/Valencia/GP4/20      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462716_A/Pais_Vasco/GP20      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462728_A/Castilla-La_Man      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229462692_A/Castilla-La_Man      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229535810_A/Texas/09/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229535992_A/South_Carolina/      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536032_A/Minnesota/02/20      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536116_A/Michigan/02/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229535828_A/California/14/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536017_A/Arizona/01/2009      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229783408_A/New_York/1682/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229783387_A/New_York/1669/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892757_A/Mexico/InDRE411      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892760_A/Canada-ON/RV152      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892769_A/Canada-ON/RV152      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892766_A/Canada-NS/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892763_A/Canada-AB/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511857_A/Mexico/4604/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511866_A/Mexico/4603/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511860_A/Mexico/4486/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511872_A/Mexico/4115/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237511869_A/Mexico/4108/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229783374_A/Korea/01/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229892755_A/Canada-NS/RV153      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229598887_A/Texas/15/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|228017754_A/California/06/2      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|229536106_A/Nebraska/02/200      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
gi|237624336_A/swine/Alberta/O      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50
                                    **************************************************

gi|229299513_A/Texas/05/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229368685_A/Denmark/513/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227831790_A/Texas/05/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229299533_A/Texas/04/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977168_A/California/07/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977144_A/California/07/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977112_A/California/04/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227809840_A/California/04/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977156_A/California/08/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|227977124_A/California/08/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396499_A/Ohio/07/2009         RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536008_A/Kansas/03/2009       RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396476_A/New_York/19/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396461_A/Texas/06/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396401_A/New_York/31/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396412_A/New_York/23/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396386_A/New_York/18/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396448_A/New_York/15/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396350_A/New_York/12/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396372_A/New_York/11/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396432_A/New_York/10/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229396362_A/New_York/06/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229484057_A/Mexico/InDRE448      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229484060_A/Canada-ON/RV152      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229484055_A/Canada-NS/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462704_A/Valencia/GP4/20      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462716_A/Pais_Vasco/GP20      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462728_A/Castilla-La_Man      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229462692_A/Castilla-La_Man      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229535810_A/Texas/09/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229535992_A/South_Carolina/      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536032_A/Minnesota/02/20      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536116_A/Michigan/02/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229535828_A/California/14/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229536017_A/Arizona/01/2009      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229783408_A/New_York/1682/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229783387_A/New_York/1669/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892757_A/Mexico/InDRE411      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892760_A/Canada-ON/RV152      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892769_A/Canada-ON/RV152      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892766_A/Canada-NS/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892763_A/Canada-AB/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511857_A/Mexico/4604/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511866_A/Mexico/4603/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511860_A/Mexico/4486/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511872_A/Mexico/4115/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|237511869_A/Mexico/4108/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229783374_A/Korea/01/2009        RMGDLHYLQSRNKKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229892755_A/Canada-NS/RV153      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|229598887_A/Texas/15/2009        RMGDLHYLQSRNEKWRKQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100
gi|228017754_A/California/06/2      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100
gi|229536106_A/Nebraska/02/200      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100
gi|237624336_A/swine/Alberta/O      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100
                                    ************:***:********************* ***********

gi|229299513_A/Texas/05/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229368685_A/Denmark/513/200      QALQLLLEVEQEIRAFS---- 117
gi|227831790_A/Texas/05/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229299533_A/Texas/04/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|227977168_A/California/07/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977144_A/California/07/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977112_A/California/04/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227809840_A/California/04/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977156_A/California/08/2      QALQLLLEVEQEIRAFSFQLI 121
gi|227977124_A/California/08/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229396499_A/Ohio/07/2009         QALQLLLEVEQEIRAFSFQLI 121
gi|229536008_A/Kansas/03/2009       QALQLLLEVEQEIRAFSFQLI 121
gi|229396476_A/New_York/19/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396461_A/Texas/06/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229396401_A/New_York/31/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396412_A/New_York/23/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396386_A/New_York/18/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396448_A/New_York/15/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396350_A/New_York/12/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396372_A/New_York/11/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396432_A/New_York/10/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229396362_A/New_York/06/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229484057_A/Mexico/InDRE448      QALQLLLEVEQEIRAFSFQLI 121
gi|229484060_A/Canada-ON/RV152      QALQLLLEVEQEIRAFSFQLI 121
gi|229484055_A/Canada-NS/RV153      QALQLLLEVEQEIRAFSFQLI 121
gi|229462704_A/Valencia/GP4/20      QALQLLLEVEQEIRAFSFQLI 121
gi|229462716_A/Pais_Vasco/GP20      QALQLLLEVEQEIRAFSFQLI 121
gi|229462728_A/Castilla-La_Man      QALQLLLEVEQEIRAFSFQLI 121
gi|229462692_A/Castilla-La_Man      QALQLLLEVEQEIRAFSFQLI 121
gi|229535810_A/Texas/09/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229535992_A/South_Carolina/      QALQLLLEVEQEIRAFSFQLI 121
gi|229536032_A/Minnesota/02/20      QALQLLLEVEQEIRAFSFQLI 121
gi|229536116_A/Michigan/02/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229535828_A/California/14/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229536017_A/Arizona/01/2009      QALQLLLEVEQEIRAFSFQLI 121
gi|229783408_A/New_York/1682/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229783387_A/New_York/1669/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229892757_A/Mexico/InDRE411      QALQLLLEVEQEIRAFSFQLI 121
gi|229892760_A/Canada-ON/RV152      QALQLLLEVEQEIRAFSFQLI 121
gi|229892769_A/Canada-ON/RV152      QALQLLLEVEQEIRAFSFQLI 121
gi|229892766_A/Canada-NS/RV153      QALQLLLEVEQEIRAFSFQLI 121
gi|229892763_A/Canada-AB/RV153      QALQLLLEVEQEIRAFSFQLI 121
gi|237511857_A/Mexico/4604/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511866_A/Mexico/4603/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511860_A/Mexico/4486/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511872_A/Mexico/4115/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237511869_A/Mexico/4108/200      QALQLLLEVEQEIRAFSFQLI 121
gi|229783374_A/Korea/01/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|229892755_A/Canada-NS/RV153      QALQLLLEVEQEIRTFSFQLI 121
gi|229598887_A/Texas/15/2009        QALQLLLEVEQEIRAFSFQLI 121
gi|228017754_A/California/06/2      QALQLLLEVEQEIRAFSFQLI 121
gi|229536106_A/Nebraska/02/200      QALQLLLEVEQEIRAFSFQLI 121
gi|237624336_A/swine/Alberta/O      QALQLLLEVEQEIRAFSFQLI 121
                                    **************:**
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