6csf

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Crystal structure of sodium/alanine symporter AgcS with D-alanine boundCrystal structure of sodium/alanine symporter AgcS with D-alanine bound

Structural highlights

6csf is a 6 chain structure with sequence from Methanococcus maripaludis S2 and Mus musculus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.3Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

AGCS_METMP Probably functions as a sodium/L- and D-alanine symporter for alanine uptake.[1]

Publication Abstract from PubMed

The amino acid, polyamine, and organocation (APC) superfamily is the second largest superfamily of membrane proteins forming secondary transporters that move a range of organic molecules across the cell membrane. Each transporter in the APC superfamily is specific for a unique subset of substrates, even if they possess a similar structural fold. The mechanism of substrate selectivity remains, by and large, elusive. Here, we report two crystal structures of an APC member from Methanococcus maripaludis, the alanine or glycine:cation symporter (AgcS), with l- or d-alanine bound. Structural analysis combined with site-directed mutagenesis and functional studies inform on substrate binding, specificity, and modulation of the AgcS family and reveal key structural features that allow this transporter to accommodate glycine and alanine while excluding all other amino acids. Mutation of key residues in the substrate binding site expand the selectivity to include valine and leucine. These studies provide initial insights into substrate selectivity in AgcS symporters.

Structural basis for substrate binding and specificity of a sodium-alanine symporter AgcS.,Ma J, Lei HT, Reyes FE, Sanchez-Martinez S, Sarhan MF, Hattne J, Gonen T Proc Natl Acad Sci U S A. 2019 Jan 18. pii: 1806206116. doi:, 10.1073/pnas.1806206116. PMID:30659158[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Moore BC, Leigh JA. Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease. J Bacteriol. 2005 Feb;187(3):972-9. doi: 10.1128/JB.187.3.972-979.2005. PMID:15659675 doi:http://dx.doi.org/10.1128/JB.187.3.972-979.2005
  2. Ma J, Lei HT, Reyes FE, Sanchez-Martinez S, Sarhan MF, Hattne J, Gonen T. Structural basis for substrate binding and specificity of a sodium-alanine symporter AgcS. Proc Natl Acad Sci U S A. 2019 Jan 18. pii: 1806206116. doi:, 10.1073/pnas.1806206116. PMID:30659158 doi:http://dx.doi.org/10.1073/pnas.1806206116

6csf, resolution 3.30Å

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