Nitrite reductase 3D structures

3D structures of nitrite reductase3D structures of nitrite reductase

Updated on 13-September-2020

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• Cu-containing nitrite reductase with copper only
  • 1nia, 1nib, 1nic, 1nid, 1nie, 1nif, 2nrd, 1kcb, 1rzp, 1rzq, 2bw4, 2bw5, 2avf, 5l6k, 5i6l, 5l6m, 5i6n, 5l6o, 5i6p, 5n8f, 5n8g, 5n8h, 5n8i, 6gsq, 6gt2, 6gtj – AcNIR + Cu – Achromobacter cycloclastes
    
  • 6knf, 6kng – AcNIR + Cu – Cryo EM
    
  • 2afn, 1aq8, 1as7, 2fjs, 2pp7, 2pp8, 3h4h, 3h56, 4ysc, 4yse, 5d4h, 5d4i, 5d4j, 5f7a, 5f7b - AfNIR + Cu – Alcaligenes faecalis
    
  • 1ntd, 1npj, 1npn, 1zdq, 3h4f - AfNIR (mutant) + Cu
    
  • 1ndr, 1ndt, 1bq5, 1hau, 1haw, 1oe1, 1oe3, 5b1k - AxNIR + Cu – Achromobacter xylosoxidans
    
  • 1oe2, 2jfc - AxNIR (mutant) + Cu
    
  • 1mzz, 2dy2 - RsNIR + Cu – Rhodobacter sphaeroides
    
  • 2dv6, 6tfo - HdNIR + Cu – Hyphomicrobium denitrificans
    
  • 3wia - GkNIR + Cu – Geobacillus kaustophilus
    
  • 3wkq, 3x1e, 4ysa, 4ysd, 4yso, 4ysp, 4ysq, 4ysr, 4yss, 4yst, 4ysu, 4zk8, 5ytl - GtNIR + Cu - Geobacillus thermodentntrificans
    
  • 3x1f, 3x1g, 5ytm - GtNIR (mutant) + Cu
    
  • 5tb7, 5ue6 - NIR + Cu – Neisseria gonorrhoeae
    
  • 6hbe - NIR + Cu – Thermus scotoductus
    
  • 6qpu – RpNIR + Cu – Ralstonia pickettii
    
  • 6thf – BrNIR + Cu – Bradyrhizobium
    
• Cu-containing nitrite reductase with variety of metals
  • 1et5, 1et8 - AfNIR (mutant) + Zn + Cu
    
  • 1et7 - AfNIR (mutant) + Cd + Cu
    
  • 2vm3, 2vm4, 2vw4, 2vw6, 2vw7, 2vn3 - AxNIR + Zn + Cu
    
  • 2bo0 - AxNIR (mutant) + Zn
    
  • 2vmj - AxNIR + Zn
    
  • 1gs6 - AxNIR (mutant) + Mg + Cu
    
  • 1gs7, 1wae, 1wa0, 1wa1, 2bp0, 2bp8, 2xx0, 2xxf, 2xxg - AxNIR (mutant) + Zn + Cu
    
  • 2zon - AxNIR + heme + Cu
    
  • 1mzy, 1zv2, 2a3t - RsNIR + Mg + Cu
    
  • 1n70 - RsNIR (mutant) + Mg + Cu
    
  • 3wi9 - GkNIR + Zn + Cu
    
  • 5onx, 5ony - NIR + Zn + Cu – Alcaligenes xylosoxydans
    
  • 6the – BrNIR + Cu + Yt + Tb
    
  • 4csp - AcNIR (mutant) + Zn + Cu
    
• Cu-containing nitrite reductase binary complex
  • 1as6, 1as8, 1sjm, 2ppc - AfNIR + NO2 + Cu
    
  • 2e86 - AfNIR + N3 + Cu
    
  • 1j9q, 1j9r, 1j9s, 1j9t, 1l9o, 1l9p, 1l9q, 1l9r, 1l9s, 1l9t - AfNIR (mutant) + NO2 + Cu
    
  • 1zds, 2b08 - AfNIR (mutant) + acetamide + Cu
    
  • 1snr - AfNIR + NO + Cu
    
  • 2pp9 - AfNIR + NO3 + Cu
    
  • 2ppa - AfNIR + N2O + Cu
    
  • 2ppd, 2ppe, 2ppf - AfNIR (mutant) + NO + Cu
    
  • 2p80 - AfNIR + pseudoazurin + Cu
    
  • 1nds - AxNIR + NO2 + Cu
    
  • 2xx1 - AxNIR (mutant) + NO2 + Cu
    
  • 2xwz - AxNIR + NO + NO2 + Cu
    
  • 1wa2 - AxNIR (mutant) + NO2 + Zn + Cu
    
  • 5b1j - AxNIR + pseudoazurin + Cu
    
  • 2bwd, 2bwi, 5og2, 5og3, 5og4, 5og5, 5og6, 5ogf, 5ogg, 5of5, 5of6, 5of7, 5of8, 5ofc, 5ofd, 5ofe, 5off, 5ofg, 5ofh, 5i6k, 5i6m, 5i6o, 5akr, 6gb8, 6gbb, 6gby, 6gcg, 6gt0, 6gti, 6gtk, 6gtl, 6gtn - AcNIR + NO2 + Cu
    
  • 4csz - AcNIR (mutant) + NO2 + Cu
    
  • 2y1a - AcNIR + NO + Cu
    
  • 2dws, 2dwt - RsNIR + NO2 + Cu
    
  • 3wkp, 3x1n - GtNIR (mutant) + NO2 + Cu
    
  • 3wni, 3wnj - GtNIR + O2 + Cu
    
  • 5ytn - GtNIR (mutant) + H2O2 + Cu
    
  • 6qpt – RpNIR + Cu + NO2
    
  • 6qpv, 6qpz, 6qq1 – RpNIR (mutant) + Cu + heme
    
  • 6qpx, 6qq0, 6qq2 – RpNIR (mutant) + Cu + heme + NO2
    
• Heme-containing nitrite reductase - (Cytochrome C-552)
  • 1aof, 1qks, 1hj4, 1hj5, 1h9x, 1hcm - PpNIR – Paracoccus pantotrophus
    
  • 1gq1 - PpNIR (mutant)
    
  • 1nir, 1bl9, 1n15, 1n50, 1n90, 6rtd, 6rte – PaNIR – Pseudomonas aeruginosa
    
  • 1hzu - PaNIR (mutant)
    
  • 1qdb - NIR – Sulfurospirillum deleyianum
    
  • 1fs7, 1fs8 - WsNIR – Wolinella succinogenes
    
  • 3bng - WsNIR (mutant)
    
  • 1gu6, 2rdz, 3tor – EcNIR – Escherichia coli
    
  • 2rf7, 4wjy - EcNIR (mutant)
    
  • 2jo6 – EcNIR small subunit – NMR
    
  • 2jza - NIR small subunit – Pectobacterium atrosepticum - NMR
    
  • 1oah – NIR – Desulfovibrio desulfuricans
    
  • 2j7a - DvNIR – Desulfovibrio vulgaris
    
  • 2ot4, 3gm6, 3fo3, 3sce, 3uu9, 4q0t, 4q17, 4q1o, 4q4u, 4q5b, 4q5c - TnNIR – Thioalkalivibrio nitratireducens
    
  • 3m97 – PdNIR soluble domain – Paracoccus denitrificans
    
  • 2ai5 – HtNIR – Hydrogenophilus thermophilus – NMR
    
  • 2d0s, 1ynr, 3vym – HtNIR
    
  • 1ayg – NIR - Hydrogenobacter thermoluteolus – NMR
    
  • 1i6d, 1i6e, 1c7m – PdNIR functional domain – NMR
    
  • 1ql3, 1ql4 - PdNIR functional domain
    
  • 1dt1, 1qyz, 1r0q, 1c52, 3vnw – TtNIR – Thermus thermophilus
    
  • 2fwl – TtNIR + NIR oxidase subunit II
    
  • 1cno – NIR – Pseudomonas nautica
    
  • 3ubr, 6p73 – SoNIR – Shewanella oneidensis
    
  • 3sqx – TpNIR – Thioalkalivibrio paradoxus
    
  • 6v0a – NIR – Geobacter lovleyi
    
• Heme-containing nitrite reductase binary complex
  • 1dy7 - PpNIR + CO
    
  • 1hj3 - PpNIR + O2
    
  • 2e81 - WsNIR + NH2OH
    
  • 3bnf - WsNIR + sulfite
    
  • 2vr0 - DvNIR + HQNO inhibitor
    
  • 3ziy, 4ax3, 6fja, 6f1q – RpNIR + Cu – Ralstonia pickettii
    
  • 3ayf – NIR + Zn – Geobacillus stearothermophilus
    
  • 2yqb, 3zbm – RpNIR (mutant) + Cu
    
  • 3o0r – PaNIR + antibody
    
  • 5guw – PaNIR + nitric oxide reductase
    
  • 3sxq – TpNIR + Co
    
• Heme-containing nitrite reductase binary complex with cyanide
  • 1h9y - PpNIR + CN
    
  • 1gjq - PaNIR + CN
    
  • 1e2r - PdNIR+ CN
    
• Heme-containing nitrite reductase binary complex with nitric oxide
  • 1nno - PaNIR + NO
    
  • 1hzv - PaNIR (mutant) + NO
    
  • 1aom, 1aoq, 5ocb, 5ocf - PpNIR + NO + NO2
    
  • 5obo - PpNIR (mutant) + Cu + NO2
    
• Heme-containing nitrite reductase binary complex with nitrite
  • 2e80 - WsNIR + NO2
    
  • 3bnh - WsNIR (mutant) + NO
    
  • 3d1i, 3rkh, 3owm, 4l38, 4l3x, 4l3y, 4l3z - TnNIR + NO2
    
  • 6qwg - AcNIR + Cu + NO2
    
  • 6tfd - HdNIR + Cu + NO2
    
• Heme-containing nitrite reductase binary complex with azide
  • 2zo5 - TnNIR + N3
    
  • 3s7w - TnNIR + NO2 + N3
    
  • 1fs9 - WsNIR + N3
• Heme-containing nitrite reductase binary complex with sulfite
  • 3mmo - WsNIR + SO3
    
  • 3bnj - WsNIR (mutant) + SO3
    
  • 3lg1, 3lgq, 3f29, 3ttb - TnNIR + SO3
    
  • 3l1t - EcNIR + SO3
    
• Siroheme-containing assimilatory nitrite reductase
  • 2akj - NIR + S4Fe4 + siroheme – spinach
    
  • 3b0g, 3b0h - ToNIR + S4Fe4 + siroheme – tobacco
    
  • 3b0j, 3b0l, 3b0m, 3b0n, 3vlx, 3vly, 3vlz - ToNIR (mutant) + S4Fe4 + siroheme
    
  • 3vkp, 3vkq, 3vkr – SToNIR + S4Fe4 + siroheme + NO2
    
  • 3vm0 – SToNIR (mutant) + S4Fe4 + siroheme + NO2
    
  • 3vm1 – SToNIR (mutant) + S4Fe4 + siroheme + HCO3
    
  • 3vks – SToNIR + S4Fe4 + siroheme + NO
    
  • 3vkt – SToNIR + S4Fe4 + siroheme + NH2OH