Chitinase 3D structures

Revision as of 13:34, 7 May 2019 by Michal Harel (talk | contribs) (New page: == 3D Structures of Chitinase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Chitinase I or chitotriosidase I ...)
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3D Structures of Chitinase3D Structures of Chitinase

Updated on 07-May-2019 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Chitinase I or chitotriosidase I
    • 5hbf – hChi - human
    • 4wjx, 4wka – hChi catalytic domain
    • 3aro, 3b8s – VhChi residues 22-597 – Vibrio harveyi
    • 3b9e - VhChi residues 22-597 (mutant)
    • 1k85 – BcChi fibronectin domain – Bacillus circulans – NMR
    • 1itx - BcChi catalytic domain
    • 1ed7 – BcChi chitin-binding domain - NMR
    • 1ll6, 1ll7 - CiChi residues 36-427 (mutant) – Coccicioides immitis
    • 1d2k - CiChi residues 36-427
    • 3n11 – BcChi – Bacillus cereus
    • 3iwr, 2dkv – Chi residues 33-340 – Japanese rice
    • 3g6l - BoChi residues 21-426 – Bionectria ochroleuca
    • 3oa5, 4dws, 4a5q – Chi – Yersinia entomophaga
    • 4mpi – HbChi chitin-binding domain – Hevea brasiliensis
    • 4mst – HbChi catalytic domain
    • 4tx7 – Chi – yard-long bean
  • Chitinase I binary complex
  • Chitinase II
    • 1e15, 3wd0 - SmChi
    • 1ogb, 1goi, 1e6p - SmChi (mutant)
    • 1kfw – Chi catalytic domain – Arthrobacter
    • 1dxj – Chi – Jack bean
    • 5y29 – OfChi catalytic domain 1 residues 1606-1992 – Ostrinia furnacalis
    • 5y2a – OfChi catalytic domain 2 residues 2056-2438
  • Chitinase II binary complex
  • Chitinase III
    • 2dbt, 1wvu – SgChi residues 30-294 – Streptomyces griseus
    • 1wvv - SgChi residues 30-294 (mutant)
    • 2d49 – SgChi chitin-binding domain - NMR
    • 2xvp – AfChi
    • 2xtk, 4tx6 – AfChi + inhibitor
    • 4toq – Chi - pomegrenate
    • 5wup – OfChi residues 1-482
    • 5wv8 – OfChi residues 1-482 (mutant)
    • 5wv9 – OfChi residues 1-482 + GlcNAc
    • 5wvb – OfChi residues 1-482 (mutant) + GlcNAc
    • 5wus – OfChi residues 528-987
    • 5wvf – OfChi residues 528-987 (mutant)
    • 5wvh – OfChi residues 528-987 + GlcNAc
    • 5wvg – OfChi residues 528-987 (mutant) + GlcNAc
  • Chitinase IV
    • 3hbd, 3hbe, 3hbh - Chi catalytic domain – Norway spruce
    • 4mck – Chi - maize
    • 5h7t – Chi chitinase domain – Japanese cedar
  • Chitinase V
    • 3alf – tChi residues 26-377 – tobacco
  • Chitinase V binary complex
  • Chitinase VIII
    • 2cjl - Chi residues 41-244 – Streptomyces coelicolor
  • Chitinase XVIII
    • 3sim – Chi – Crocus vernus
  • Chitinase A
    • 3wh1, 3wij – BcChiA + GlcNAC – Bryum coronatum
    • 4ij4 – BcChiA (mutant) + GlcNAC
    • 4mnj, 4r5e – spChiA – sago palm
    • 4mnk – spChiA + GlcNAC
    • 4mnl, 4mnm – spChiA (mutant) + GlcNAC
    • 5dez – ApChiA + NAG – Autographa polyhedrosis
    • 5df0 – ApChiA + NAG + chitotriothiazoline
    • 5bum – ChiA LYSM domain – field horsetail
    • 1edq, 1ctn, 5zl9, 5z7o, 5z7n, 5z7m - SmChiA – Serratia marcescens
    • 1x6l, 1rd6 – SmChiA (mutant)
    • 1x6n - SmChi (mutant) + inhibitor
    • 1ffq, 2wk2, 2wly, 2wlz, 2wm0 - SmChi + inhibitor
    • 1nh6, 1k9t, 1ffr, 1eib, 1ehn - SmChi (mutant) + polysaccharide
    • 4pxv, 5ylg – PrChiA LYSM domain – Pteris ryukuensis
    • 4rl3 – PrChiA catalytic domain
  • Chitinase B
  • Chitinase C
    • 4dyg – RyChiC + NAG – Rye
    • 4dwx - RyChiC
    • 4j0l – RyChiC + GlcNAC
    • 4axn – SmChiC
  • Chitinase H
    • 3w4r, 5gpr – cbChiH – corn borer
    • 3wkz – cbChiH (mutant)
    • 5gqb – cbChiH + chitohepatose
  • Other chitinases
    • 1wno, 1w9p - AfChi
    • 2dsk - PfChi catalytic domain – Pyrococcus furiosus
    • 3afb - PfChi catalytic domain (mutant)
    • 1cns – Chi – Hordeum vulgare
    • 2czn, 2rts - PfChi chitin-binding domain – NMR
    • 2cwr - PfChi chitin-binding domain
    • 3ian – Chi (mutant) – Lactococcus lactis
    • 3fxy - hChi catalytic domain
    • 1lq0 - hChi residues 22-286
    • 1guv - hChi residues 22-387
    • 3fnd, 3co4 – Chi – Bacteroides thetaiotamicron
    • 3cql – Chi – Carica papaya
    • 2z37 - BjChi catalytic domain – Brassica juncea
    • 2z39 – BjChi catalytic domain (mutant)
    • 2uy2 – yChi residues 22-315 – yeast
    • 4hmc – MmChi 60 – Moritella marina
    • 4mb3 – MmChi 60 (mutant)
    • 3w3e – Chi – cowpea
    • 3w6b – RaChi catalytic domain – Ralstonia
    • 3w6e – RaChi catalytic domain (mutant)
    • 4w5z – Chi 60 catalytic domain – Vibrio marinus
    • 5kz6 – Chi – Bacillus anthracis
    • 5gzt, 5gzv, 5gzu – ChiW – Paeniacillus
    • 5dhd – TkChi CHBD2 domain – Thermococcus kodakarensis
    • 5dhe – TkChi CHBD3 domain
    • 5aa7 – Chi polusaccharide monooxygenase domain – Jonesia dentrificans
    • 4w5u – Chi 40 – Streptomyces thermoviolaceus
    • 4txg – Chi – Chromobacterium violaceum
    • 5vg0 – JdChi – Jonesia denitrificans
    • 5vg1 – JdChi – Neutron
    • 5k2l – Chi LYSM domain – Volvox carteri
    • 6idn – Chi – Ipomoea carnea
    • 6g9c, 6g9e – Chi – pig whipworm
    • 6bt9 – Chi – Bacillus thuringesis
    • 5yuq, 5xwq, 5xwf – Chi – Rhizomucor miehei
  • Other chitinases binary complex
    • 3a4w, 3a4x – PfChi catalytic domain (mutant) + NAG
    • 1lg1 - hChi residues 22-387 + chitobiose
    • 1lg2 - hChi residues 22-387 + ethylene glycol
    • 3fy1, 2ybt, 2ybu - hChi catalytic domain + inhibitor
    • 1hki, 1hkj - hChi + inhibitor
    • 2z38 - BjChi catalytic domain + Cl
    • 2uy3, 2uy4, 2uy5 - yChi residues 22-315 + inhibitor
    • 1w9v, 1w9u - AfChi + polypeptide
    • 4hmd – MmChi 60 + intermediate
    • 4hme – MmChi 60 + NAG
    • 4mb4, 4mb5 – MmChi 60 (mutant) + NAG
    • 3w6c – RaChi catalytic domain + disaccharide
    • 3w6d, 3w6f – RaChi catalytic domain (mutant) + polysaccharide
    • 5xsv - TcChi residues 321-805 – Thermococcus chitonophagus
    • 5xsx, 5xsw - TcChi residues 321-805 + substrate

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ReferencesReferences

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman