Amylase 3D structures

3D structures of amylase3D structures of amylase

Updated on 17-March-2019

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• α-amylase
  • 3n8t – TkAAM – Thermococcus kodakarensis
  • 3k8k – BtAAM – Bacterioides thetaiotaomicron
  • 3kwx, 2guy – AoAAM – Aspergilluys oryzae
  • 2wpg – AAM – Xanthomonas campestris
  • 2wc7, 2wcs, 2wkg – AAM catalytic region – Cyanobacterium
  • 3bh4 – BaAAM – Bacillus amyloliquefaciens
  • 1e3x, 1e43 – BaAAM chimera
  • 1ht6, 1amy - bAAM – barley
  • 3bsg – bAAM (mutant)
  • 3dhu – AAM – Lactobacillus plantarum
  • 3dc0, 1ud2, 1ud4, 1ud5, 1ud6, 1ud8, 1ud3 – BacAAM – Bacillus KR8104
  • 3bcf, 1wza – HoAAM – Halothermothrix orenii
  • 2die, 1wp6 – AAM alkaline – Bacillus sp.
  • 2gjr – BhAAM – Bacillus halmapalus
  • 2b5d – AAM – Thermotoga maritima
  • 2c3g, 2c3v – BhaloAAM – Bacillus halodurans
  • 1ji1, 1ji2, 1bvz - TvAAM – Thermoactinomyces vulgaris
  • 1wzk, 1wzl, 1wzm, 1izj, 1izk, 1jf5, 1jf6 – TvAAM (mutant)
  • 1mwo, 1mxd – PwAAM – Pyrococcus woesei
  • 1ob0, 1bli - BlAAM (mutant) – Bacillus licheniformis
    
  • 1vjs – BlAAM precursor
    
  • 1bpl – BlAAM
    
  • 1b0i, 1aqm, 1aqh – PhAAM - Pseudoalteromonas haloplanktis
  • 1jd7, 1jd9 - PhAAM (mutant)
  • 1g5a – NpAAM – Neisseria polysaccharea
  • 1hvx - BaAAM – Bacillus stearothermophilus
  • 4uzu – BaAAM (mutant)
    
  • 1qho – GsAAM – Geobacillus stearothermophilus
  • 1jae – TmAAM – Tenebrio molitor
  • 1pif – pAAM – pig
  • 6taa, 2aaa - AoAAM
    
  • 4aee – AAM catalytic domain – Staphylothermus marinus
    
  • 3ren – AAM – Clostridium perfringens
    
  • 3vm5 – AAM – Oryzias latipes
    
  • 3vm7 – AAM – Malbranchea cinnamomea
    
  • 4gkl – AAM – Thermotoga neapolitana
    
  • 5m99 – AAM – Thermotoga petrophila
    
  • 4ays – AAM – Deinococcus radiodurans
    
  • 3wn6 – AAM (mutant) – Japonica rice
    
  • 5a2a - AnAAM - Anoxybacillus
    
  • 6az5 – AAM – Eubacterium rectale
    
  • AAM saccharide complexes
    • 3n92, 3n98 – TkAAM + saccharide
      
    • 3l2l, 3l2m, 1vah, 1wo2, 1ua3, 1pig, 1ppi - pAAM + saccharide
      
    • 1hx0 – pAAM + acarbose
      
    • 1ose – pAAM + acarbose
      
    • 3k8l - BtAAM (mutant) + saccharide
      
    • 3k8m - BtAAM + acarbose
      
    • 6bs6 – BtAAM (mutant) + glucose
      
    • 2d2o, 1jl8, 1jib - TvAAM + saccharide
      
    • 3a6o – TvAAM + acarbose
      
    • 2d0f, 2d0g, 2d0h, 1vb9, 1vfm, 1vfo, 1vfu, 1uh2, 1uh4 - TvAAM (mutant) + saccharide
      
    • 1uh3 - TvAAM (mutant) + acarbose
      
    • 1bg9, 1rpk - bAAM + acarbose
      
    • 1p6w – bAAM + substrate analog
    • 1rp8, 1b1y, 1rp9 - bAAM (mutant) + saccharide
      
    • 3bsh, 2qpu, 2qps - bAAM (mutant) + acarbose
      
  • 6f9h, 6f9j - bAAM (mutant) + prodrug
    
  • 6f9l - bAAM (mutant) + maltose derivative
    
    • 3bcd - HoAAM + saccharide
      
    • 3bc9 - HoAAM + acarbose
      
    • 2gjp, 1w9x - BhAAM + saccharide
      
    • 2gvy - AoAAM + saccharide
      
    • 1zs2, 1s46, 1mvy, 1mw0, 1mw1, 1mw2, 1mw3 - NpAAM (mutant) + saccharide
      
    • 1bag - BsAAM + saccharide – Bacillus subtilis
    • 1ua7 – BsAAM + acarbose
      
    • 2d3l, 2d3n - BacAAM + saccharide – Bacillus
    • 2c3h, 2c3w, 2c3x - BhaloAAM + saccharide
      
    • 1mxg - PwAAM + acarbose
      
    • 3qgv - PwAAM + sucrose
      
    • 1g9h, 1g94 - PhAAM + saccharide
      
    • 1kxh - PhAAM (mutant) + acarbose
      
    • 1e40 – BaAAM chimera + saccharide
      
    • 1e3z - BaAAM chimera + acarbose
      
    • 1fa2 - AAM + saccharide – Sweet potato
    • 1qhp - BaAAM + saccharide
      
    • 4e2o, 6ag0 - BacAAM + acarbose
      
    • 1gah, 1gai – AaAAM + acarbose – Aspergillus awamori
    • 3gly, 1agm, 1glm – AaAAM + saccharide
      
    • 5a2c, 5a2b - AnAAM + maltose
      
  • 6gya - AAM + a-glucose + b-glucose - Alicyclosbacillus
    
  • AAM other complexes
    • 1kxq, 1kxt, 1kxv – pAAM + antibody VHH fragment
    • 1bvn, 1dhk, 4x0n – pAAM + protein inhibitor
    • 1ava – bAAM + protein inhibitor
    • 1l0p – PhAAM + NO3
    • 1clv, 1viw, 1tmq – TmAAM + protein inhibitor
• Human pancreatic α-amylase
  • 3ij7, 1bsi, 1hny, 4x9y, 5u3a – hAAM – human
    
  • 1xgz, 1kb3, 1kbb, 1kbk, 1kgu, 1kgw, 1kgx, 2cpu]] - hAAM (mutant)
    
  • 3ij8, 3ij9 – hAAM catalytic intermediate
    
  • 1xd0, 1xd1, 1cpu, 1jfh - hAAM + saccharide
    
  • 1b2y, 1xcw, 1xcx - hAAM + acarbose
    
  • 3cpu, 5td4 - hAAM (mutant) + saccharide
    
  • 1xh0, 1xh2 - hAAM (mutant) + acarbose
    
  • 2qv4, 3baj, 3bay - hAAM + acarbose + NO2
    
  • 2qmk, 3bai – hAAM + NO2
    
  • 3baw – hAAM + N3
    
  • 3bax - hAAM (mutant) + N3
    
  • 3bak – hAAM (mutant) + NO3
    
  • 1xh1 - hAAM (mutant) + Cl
    
  • 3old, 3ole, 3olg, 3oli – hAAM + statin
    
  • 1u2y, 1u30, 1u33, 5emy, 5e0f, 4w93 – hAAM + inhibitor
    
  • 5kez, 5va9 – hAAM + peptide inhibitor
    
  • 4gqq – hAAM + ethyl caffeate
    
  • 4gqr – hAAM + myricetin
    
• Human salivary α-amylase
  • 1smd, 1c8q, 1xv8 – hAAM
    
  • 1q4n, 1jxj, 1jxk – hAAM (mutant)
    
  • 3blk, 3blp, 1z32, 1nm9, 1mfu, 1mfv - hAAM (mutant) + saccharide
    
  • 3dhp - hAAM (mutant) + acarbose
    
• Pullulanase α-amylase
  • 2wan – AAM – Bacillus acidopullululyticus
  • 2fgz – KaAAM – Klebsiella aerogenes
  • 2e8y - BsAAM
    
  • 1ji2 - TvAAM
    
  • 1jl5, 1jf6, 1wzk, 1wzl, 1wzm - TvAAM (mutant)
    
  • Pullulanase α-amylase binary complexes
    • 2fh6, 2fh8, 2fhb, 2fhc, 2fhf - KaAAM + saccharide
      
    • 3fax - AAM + saccharide – Streptococcus agalactiae
    • 2e8z, 2e9b - BsAAM + saccharide
      
    • 2d2o - TvAAM + saccharide
      
    • 1g1y, 1jib, 1jl8, 1vfm, 1vfo, 1vfu, 1vb9 - TvAAM (mutant) + saccharide
      
    • 3a6o – TvAAM + acarbose
      
• Neopullulanase α-amylase
  • 4aef – AAM – Pyrococcus furiosus
    
  • 1j0h – BsAAM
    
  • 2z1k – AAM – Thermus thermophilus
    
  • 1j0i – BsAAM + α-D-glucose
    
  • 1j0k – BsAAM (mutant) + α-D-glucose
    
  • 1j0j – BsAAM (mutant) + maltotetraose
    
• β-amylase
  • 2xfr – bBAM
  • 1wdp – sBAM – soybean
  • 2dqx, 1uko, 1ukp – sBAM (mutant)
  • 1vem, 5bca, 1cqy, 1b90 – BcBAM – Bacillus cereus
  • 1ven - BcBAM (mutant)
    
  • 1fa2 - BAM + saccharide – Sweet potato
    
  • 6ger - BAM – wheat
    
  • β-amylase binary complexes
    • 2xff – bBAM + acarbose
      
    • 2xfy, 2xg9, 2xgb, 2xgi – bBAM + inhibitor
      
    • 1b1y - bBAM (mutant) + saccharide
      
    • 1wdq, 1wdr, 1wds, 1v3h, 1v3i, 1q6d, 1q6e, 1q6f, 1q6g - sBAM (mutant) + saccharide
      
    • 1q6c, 1bfn, 1bya, 1byb, 1byc, 1byd, 1btc - sBAM + saccharide
      
    • 1j0y, 1j0z, 1j10, 1j11, 1j12, 1j18, 1b9z - BcBAM + saccharide
      
    • 1veo, 1vep, 1itc - BcBAM (mutant) + saccharide
      
  • 1fa2, 5wqu - SpBAM + saccharide
    
• γ-amylase
  • 1lf6 – TtGAM – Thermoanaerobacterium thermosaccharolyticum
  • 1lf9 - TtGAM + acarbose
    
• β/α-amylase
  • 2laa, 2lab – PpBAAM – Paenibacillus polymyxa - NMR
    
  • 3voc – PpBAAM
    
• Maltohexaose-producing amylase
  • 1wp6 - BacMAM
  • 1wpc – BacMAM + saccharide
    
• Maltogenic amylase
  • 1gvi, 1sma – MAM – Thermus sp.
• Taka amylase
  • 2taa, 3vx0, 3vx1 – AoTAM
  • 7taa – AoTAM + acarbose