Jmol/Index

This is an index page pointing to resources about Jmol and JSmol.

TerminologyTerminology

Jmol and JSmol mean pretty much the same thing. Jmol is the original name of the software, meaning "Java molecular". After a version was developed that does not require Java, but runs in web browsers' HTML5/Javascript, the name JSmol was added, meaning "JavaScript molecular". Now JSmol includes Jmol.

Jmol ResourcesJmol Resources

Jmol Resources in ProteopediaJmol Resources in Proteopedia

IntroductionsIntroductions

• Introduction to Jmol, a brief, non-technical page.
• Jmol, a longer, semi-technical page.
• FirstGlance in Jmol makes the power of Jmol accessible, without learning any command language. Essentially it provides guided exploration of any macromolecule. FirstGlance enables the user to concentrate on the molecule instead of how to use the software.

TechnicalTechnical

• Superposition with jmol: How to superimpose two structures in Jmol and show them in Proteopedia.
• Jmol/Visualizing membrane position for integral membrane proteins.
• Jmol/Application: How to use the stand-alone Java application, in contrast to Jmol within a web browser.
• User:James D Watson/Using Jmol for the more technically minded. A guide to using Jmol's menu. Compared to using FirstGlance in Jmol, this is slow and cumbersome, and the Jmol menu lacks any help or explanation.
• Jmol/Synchronization
• Jmol/Visualizing large molecules
• User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol
• Distinguishing the modes of Jmol on Proteopedia: How to tell if Jmol is using Java or not.
• User:Eric Martz/JSmol Notes includes speed comparisons for Jmol_S (Java applet) vs. JSmol and partial notes about converting web resources from Jmol_S to JSmol.

See AlsoSee Also

• Java

RedirectsRedirects

There are redirects to this page from About Jmol, About JSmol, Help:Jmol and Help:JSmol.