Scripts used to make the figuresScripts used to make the figures
# intercalation
load =3k5y
restrict none
select protein
backbone on
select within(group, within(3.5, base)) and (*.CA or sidechain)
wireframe 0.3
color cpk
select nucleic
color cpk
wireframe 0.3
spacefill 0.5
select base
color red
spacefill 100%
load =1yxp # kissing loop
select all
cartoon only
select 10-16 and base
spacefill on
select :B
color green
select :A
color orange
load =4c64 #dodecamer
restrict none
select all
cartoon only
color gray
select base
spacefill on
color skyblue
select (1,3,5,7,9,11,14,16,18,20,22,24) and base
color coral