ArgA complexed with AceCoA and glutamateArgA complexed with AceCoA and glutamate

Structural highlights

5yge is a 2 chain structure with sequence from Myctu. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Gene:argA, Rv2747 (MYCTU)
Activity:Amino-acid N-acetyltransferase, with EC number 2.3.1.1
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[ARGA_MYCTU] Catalyzes the conversion of L-glutamate to alpha-N-acetyl-L-glutamate. L-glutamine is a significantly better substrate compared to L-glutamate.[1]

Publication Abstract from PubMed

l-arginine is used as a source of both carbon and nitrogen in Mycobacterium tuberculosis (Mtb) and its biosynthesis is essential for the pathogen's survival. MtbArgA (Rv2747) catalyzes the initial step in l-arginine biosynthesis by transferring an acetyl group from acetyl coenzyme A (AcCoA) to l-glutamate. MtbArgA is a class III N-acetylglutamate synthase (NAGS) with no structural information. Here, we solved the crystal structure of MtbArgA complexed with AcCoA and l-glutamate. The overall structure adopts a classic fold of the GCN5-related N-acetyltransferase (GNAT) family, characterized by a "V"-shaped cleft and beta-bulge, but uses distinct residues for the binding and reaction of AcCoA. In particular, its activity depends on dimerization to form a deep, vast pocket for l-glutamate binding. Interestingly, in the structure, l-glutamate binds at a site far away from AcCoA, implying a mechanism of separate capture and catalysis. Additionally, based on a docking model of l-glutamate at the catalytic site, a one-step sequential mechanism was proposed for enzymatic catalysis. Important sites for substrate binding and catalysis were also evaluated by site-directed mutagenesis study and activity analysis. The unique features of the MtbArgA structure will provide useful insights for inhibitor design and anti-tuberculosis drug discovery.

Crystal structure of l-glutamate N-acetyltransferase ArgA from Mycobacterium tuberculosis.,Yang X, Wu L, Ran Y, Xu A, Zhang B, Yang X, Zhang R, Rao Z, Li J Biochim Biophys Acta. 2017 Sep 21. pii: S1570-9639(17)30225-X. doi:, 10.1016/j.bbapap.2017.09.009. PMID:28943401[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Errey JC, Blanchard JS. Functional characterization of a novel ArgA from Mycobacterium tuberculosis. J Bacteriol. 2005 May;187(9):3039-44. PMID:15838030 doi:http://dx.doi.org/10.1128/JB.187.9.3039-3044.2005
  2. Yang X, Wu L, Ran Y, Xu A, Zhang B, Yang X, Zhang R, Rao Z, Li J. Crystal structure of l-glutamate N-acetyltransferase ArgA from Mycobacterium tuberculosis. Biochim Biophys Acta. 2017 Sep 21. pii: S1570-9639(17)30225-X. doi:, 10.1016/j.bbapap.2017.09.009. PMID:28943401 doi:http://dx.doi.org/10.1016/j.bbapap.2017.09.009

5yge, resolution 2.04Å

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