5mq3

From Proteopedia
Revision as of 19:16, 22 March 2017 by OCA (talk | contribs)
Jump to navigation Jump to search
Warning: this is a large structure, and loading might take a long time or not happen at all.

Structure of AaLS-negStructure of AaLS-neg

Structural highlights

5mq3 is a 180 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Activity:6,7-dimethyl-8-ribityllumazine synthase, with EC number 2.5.1.78
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT
Warning: this is a large structure, and loading might take a long time or not happen at all.

Function

[RISB_AQUAE] Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.[1] [2]

Publication Abstract from PubMed

Proteins that self-assemble into regular shell-like polyhedra are useful, both in nature and in the laboratory, as molecular containers. Here we describe cryo-electron microscopy (EM) structures of two versatile encapsulation systems that exploit engineered electrostatic interactions for cargo loading. We show that increasing the number of negative charges on the lumenal surface of lumazine synthase, a protein that naturally assembles into a approximately 1-MDa dodecahedron composed of 12 pentamers, induces stepwise expansion of the native protein shell, giving rise to thermostable approximately 3-MDa and approximately 6-MDa assemblies containing 180 and 360 subunits, respectively. Remarkably, these expanded particles assume unprecedented tetrahedrally and icosahedrally symmetric structures constructed entirely from pentameric units. Large keyhole-shaped pores in the shell, not present in the wild-type capsid, enable diffusion-limited encapsulation of complementarily charged guests. The structures of these supercharged assemblies demonstrate how programmed electrostatic effects can be effectively harnessed to tailor the architecture and properties of protein cages.

Structure and assembly of scalable porous protein cages.,Sasaki E, Bohringer D, van de Waterbeemd M, Leibundgut M, Zschoche R, Heck AJ, Ban N, Hilvert D Nat Commun. 2017 Mar 10;8:14663. doi: 10.1038/ncomms14663. PMID:28281548[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Haase I, Mortl S, Kohler P, Bacher A, Fischer M. Biosynthesis of riboflavin in archaea. 6,7-dimethyl-8-ribityllumazine synthase of Methanococcus jannaschii. Eur J Biochem. 2003 Mar;270(5):1025-32. PMID:12603336
  2. Zhang X, Meining W, Fischer M, Bacher A, Ladenstein R. X-ray structure analysis and crystallographic refinement of lumazine synthase from the hyperthermophile Aquifex aeolicus at 1.6 A resolution: determinants of thermostability revealed from structural comparisons. J Mol Biol. 2001 Mar 9;306(5):1099-114. PMID:11237620 doi:10.1006/jmbi.2000.4435
  3. Sasaki E, Bohringer D, van de Waterbeemd M, Leibundgut M, Zschoche R, Heck AJ, Ban N, Hilvert D. Structure and assembly of scalable porous protein cages. Nat Commun. 2017 Mar 10;8:14663. doi: 10.1038/ncomms14663. PMID:28281548 doi:http://dx.doi.org/10.1038/ncomms14663

5mq3, resolution 5.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA