The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~UbThe structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub

Structural highlights

4ldt is a 4 chain structure with sequence from Caeel and Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Gene:OTUB1, OTB1, OTU1, HSPC263, C25D7.8, otub-1 (CAEEL), UBC (Homo sapiens), UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B (Homo sapiens)
Activity:Ubiquitinyl hydrolase 1, with EC number 3.4.19.12
Resources:FirstGlance, OCA, RCSB, PDBsum

Publication Abstract from PubMed

OTUB1 is a Lys48-specific deubiquitinating enzyme that forms a complex in vivo with E2 ubiquitin (Ub)-conjugating enzymes including UBC13 and UBCH5. OTUB1 binds E2~Ub thioester intermediates and prevents ubiquitin transfer, thereby noncatalytically inhibiting accumulation of polyubiquitin. We report here that a second role of OTUB1-E2 interactions is to stimulate OTUB1 cleavage of Lys48 polyubiquitin. This stimulation is regulated by the ratio of charged to uncharged E2 and by the concentration of Lys48-linked polyubiquitin and free ubiquitin. Structural and biochemical studies of human and worm OTUB1 and UBCH5B show that the E2 enzyme stimulates binding of the Lys48 polyubiquitin substrate by stabilizing folding of the OTUB1 N-terminal ubiquitin-binding helix. Our results suggest that OTUB1-E2 complexes in the cell are poised to regulate polyubiquitin chain elongation or degradation in response to changing levels of E2 charging and available free ubiquitin.

E2 ubiquitin-conjugating enzymes regulate the deubiquitinating activity of OTUB1.,Wiener R, Dibello AT, Lombardi PM, Guzzo CM, Zhang X, Matunis MJ, Wolberger C Nat Struct Mol Biol. 2013 Aug 18. doi: 10.1038/nsmb.2655. PMID:23955022[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Wiener R, Dibello AT, Lombardi PM, Guzzo CM, Zhang X, Matunis MJ, Wolberger C. E2 ubiquitin-conjugating enzymes regulate the deubiquitinating activity of OTUB1. Nat Struct Mol Biol. 2013 Aug 18. doi: 10.1038/nsmb.2655. PMID:23955022 doi:10.1038/nsmb.2655

4ldt, resolution 1.90Å

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