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User:Wayne Decatur/Converting Exported Proteopedia Pages from Jmol to JSmol

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Revision as of 22:47, 10 September 2013 by Wayne Decatur (talk | contribs) (starting page)
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Java security has made working offline with Proteopedia pages more difficult. Macs running the current operating system have no options for even running Proteopedia pages at present because Jmol is based on Java. This is to provide a work around by converting the exported pages to run on a Javascript version of Jmol, called JSmol.

Note: presently the option to export pages from Proteopedia has been removed because of the Java issues. Wayne Decatur 21:47, 10 September 2013 (IST)

PREPARINGPREPARING

Need:
 

  • a
  • b


Used Beta server - mainly because it allows turning off fitting so I can show relationship (symmetry operations until the SYMOP functions within Jmol work within Proteopedia when newer version added) of identical conformations, left fitting on for showing difference between chain A and chain B.


OTHER THING I HAD TO DO OF COURSE WAS THE MORPHS I DECIDED TO USE WITHOUT ROTATION AS I RECEIVED THEM FROM THE SERVER (THE ONES RELATING TO SYMMETRY OF EQUIVALENT SUBUNITS) I HAD TO AT LEAST CHANGE THE MODEL NUMBERS TO NOT INCLUDE 'MODEL 0'. JUST ADDING 1 TO EACH FIXED.


CONVERSIONCONVERSION

change text here
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