User:Fadel A. Samatey/FlhBc I

Interactive 3D Complement in Proteopedia

Inhibition of a type III secretion system by the deletion of a short loop in one of its membrane proteins.

Vladimir A. Meshcheryakov, Akio Kitao, Hideyuki Matsunami and Fadel A. Samatey. Acta Cryst. D69: 812-820 (2013). doi:10.1107/S0907444913002102

Brief IntroductionBrief Introduction

FlhB is a membrane protein that is part of the flagellum-specific secretion apparatus. It is required for secretion of flagellar proteins, and for bacterial motility. FlhB is paralogous to a protein in the virulence type III secretion system. FlhB has a hydrophobic integral membrane domain, predicted to have four transmembrane helices, a flexible linker that is highly conserved and essential for function, and a cytoplasmic domain. The present study reports the structures of the cytoplasmic domains of two bacterial taxa. (Please see the publication for a more detailed introduction.)

Molecular Tour: FlhBc StructuresMolecular Tour: FlhBc Structures

This page is under construction. We expect to complete additional interactive molecular scenes before May 5, 2013. Salmonella FlhB from Salmonella typhimurium consists of 383 amino acids. The cytoplasmic domain 219-383 (length 165, 43% of full length) was crystallized. The resulting model 3b0z includes coordinates for residues 229-353 (length 125, 76% of the crystallized length). The asymmetric unit contains a single molecule (). As explained in the publication, the position of the long alpha helix appears to be stabilized by crystal contacts (not shown). The chain is . This is believed to be autocatalytic cleavage involved in the transition of the export apparatus from hook to filament mode. Mutations that prevent this cleavage render the bacteria non-motile. Aquifex FlhB from the thermophile Aquifex aeolicus is shorter, 350 residues (vs. 383 for S. typhimurium), with 32% sequence identity. Residues 213-350 (length 138) were crystallized, and the resulting model 3b1s has in the asymmetric unit. The molecule displayed in the comparison in the next section, with chains designated C and D, was chosen because it has the lowest average temperature factor (66.2, vs. 84.7 and 72.6 for A,B and E,F respectively). It has coordinates for 232-337 (length 106, 77% of the crystallized segment), cleaved at NPTH between Asn263 and Pro264. Comparison The FlhBc Salmonella 3D structure is very similar to that of Aquifex. 102 alpha carbons align with an RMSD of 1.0 Å. Their FlhB's have 32% sequence identity. , then click the button below to do a structural alignment.

spinqualitylabelsall models Cytoplasmic domain of FlhB Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

Notes for DevelopersNotes for Developers

• File:Workbench 3b0z.pdb.gz
• File:Workbench 3b1s.pdb.gz
• File:Workbench 3b0z 3b1sCD.pdb 1.1 is 3b0z(St) while 1.2 is 3b1s chains C and D. Not aligned.
• File:Workbench 3b0z 3b1sCD aligned.pdb