Cholera toxin

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PDB ID 1xtc

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Cholera toxin 1xtc
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml



Cholera toxin (CTX), secreted by bacterium Vibrio Cholerae,is an oligomeric complex of an enzymatic subunit (chain A) and 5 copies of chain B which bind to the cell surface. CTX is the main cause of the diarrhea symptoms of cholera infection.

PDB ID: 1XTC MMDB ID: 52036

StructureStructure

Interaction of 7 chains of Cholera toxin.1xtc

Cholera toxin(CTX) has two types of subunits: subunit A and subunit B. A subunit contains A1 domain, which includes the enzymatic active site, and A2 domain, which has a α–helix tail. The B subunit contains five chains that form a pentameric ring around the central pore in structure; Subunit A and subunit B are assembled by the α–helix tail of A2 domain, which inserts into the central pore. CTX is the main virulence factor of the pathogen Vibrio cholerae and cause the major symptom of infection: extreme diarrhea, vomiting, cramps and even death [1][2][3]. The enzymatic subunit has a globular domain (CTA1) and a long helical domain (CTA2). Once the CTX binds to the cell surface, it is internalized, and its CTA1 domain binds to ADP-ribosylation factor 6 (Arf6) enabling its catalytic activity.

The image at the lower right correspond to the crystal structure of cholera toxin (1xtc). The image at left correspond to the annotated interaction of 7 chains of cholera toxins(1xtc) in Proteopedia see Toxins.

File:1xtc.png
Crystal Structure of Cholera toxin 1xtc

mRNA StructuremRNA Structure

mRNA fold of CTX. This model is using the minimum free energy model.The colors represent the propensity of each nucleotide to participate in base pairs and whether a predicted base pair is well predicted. The scale ranges from red (highest probability) to blue-violet (lower probability).

RNA folding algorithm uses a method to minimize the free energy of the structure so that the RNA molecule is in the most stable form.

FunctionFunction

Cholera toxin, after secreted from the Vibrio cholerae, binds to the enterocytes (intestinal cells) by the interaction between the subunit B and GM1 ganglioside receptor on enterocytes, which then promotes the toxin endocytosis. Next, A1 turns to an active enzyme after separating with the A2 domain. After A1 domain of subunit A of toxin enters the cytosol, it activates the adenylate cyclase to produce cAMP through G protein, which triggers the activation of cystic fibrosis transmembrane conductance regulator (CFTR), leading to watery diarrhea: the efflux of water and ions from cells [3].

EvolutionEvolution

CTXφ Bacteriophage that is carried by Vibrio cholerae produces Cholera toxin. Cholera toxin is encoded by the gene which developed into Vibrio cholera by horizontal transfer [4].

ApplicationApplication

Subunit B of cholera toxin is designed to be applied as a neuronal tracer due to its non-toxic characteristic. It also used to identify lipid rafts as florescent tag on the cell surface since lipid rafts contains GM1 gangliosides, which will interact with subunit B during mechanism [5]. It is demonstrated that cholera toxin subunit B is a sensitive retrograde tracer for the central nervous system.[6]

3D Structures of Cholera toxin3D Structures of Cholera toxin

Updated November 2011

Structure Notation of the RNA of CTX A, CLC RNA Workbench
Phylogenetic Tree of MSA of CTX, Statistic Method:Maximum Likelihood, made by MEGA 5.05

CTXCTX

1xtc - CTX

CTX A subunitCTX A subunit

2a5d, 2a5g – CTX A subunit+hArf6+GTP – human
2a5f - CTX A subunit+hArf6+GTP+NAD
1s5b, 1s5c, 1s5d, 1s5e, 1s5f - CTX A subunit (mutant)

CTX B subunitsCTX B subunits

1fgb - CTX B subunits
1g8z , 1chp, 1chq - CTX B subunits (mutant)
1rcv, 1rd9, 1rdp, 1rf2, 1pzi, 1pzj, 1pzk, 1efi, 1eef, 1djr, 1eei – CTX B subunits+ galactoside derivatives
1llr, 1jqy, 1jr0, 1fd7, 1md2 - CTX B subunits+BMSC derivatives
1eef - CTX B subunits+PEPG
3chb, 2chb - CTX B subunits+pentasaccharide
1ct1 - CTX B subunits (mutant)+pentasaccharide
3efx – CTX B/heat-labile enterotoxin B chain
1tet – CTX peptide 3+FAB light and heavy chains - mouse

Multiple Sequence AlignmentMultiple Sequence Alignment

BlastP of CTX A subunit

Selected Sequences:

1. Cholera toxin Subunit A

2. Escherichia coli E24377A plasmid pETEC_80, complete sequence

3. Escherichia coli strain 214-III elt operon, complete sequence

4. Vibrio cholerae strain JS9803 prophage Vibrio phage CTX Zot (zot)

5. Vibrio cholera O395 chromosome II, complete sequence

6. Vibrio cholera O1 str. 2010EL-1786 chromosome 1, complete


ReferenceReference

[1] Ryan KJ; Ray CG (editors) (2004). Sherris Medical Microbiology (4th ed.). McGraw Hill. p. 375. ISBN 0838585299.

[2] Faruque SM; Nair GB (editors). (2008). Vibrio cholerae: Genomics and Molecular Biology. Caister Academic Press. ISBN 978-1-904455-33-2 .

[3] Jennifer McDowall, Cholera Toxin, EMBL-EMI, Interpro

[4] Davis B, Waldor M (2003). "Filamentous phages linked to virulence of Vibrio cholerae". Curr Opin Microbiol 6 (1): 35–42. doi:10.1016/S1369-5274(02)00005-X. PMID 12615217.

[5] Luppi P.H.. "The Discovery of Cholera-Toxin as a Powerful Neuroanatomical Tool". Retrieved 2011-03-23.

[6] Luppi P.H., Fort P., Jouvet M. Iontophoretic application of unconjugated cholera toxin B subunit (CTb) combined with immunohistochemistry of neurochemical substances: a method for transmitter identification of retrogradely labeled neurons. Brain Res. 534 (1-2) pages : 209-224 (1990)

External LinksExternal Links

PDB ID: 1XTC [1]

MMDB ID: 52036 [2]

PubMed[3]

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Alexander Berchansky, Michal Harel, Yang Yang