User:Eric Martz/Sandbox 13
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Sequence Alignment Tools
What I want:
- % identity vs. length of each chain and number of identical residues/chain length for each chain
- colors that indicate identity/similarity/difference
- ability to block a region of the alignment and get identity and length for that region (could cut and paste a new job ...)
Jalview: seems to be mostly an alignment editing tool.
EBI Clustal
RCSB Compare Structures: Smith-Waterman does #1,#2 but only for sequences of 3D structures.