Proteopedia

Jaime Prilusky

Joined 21 February 2008
Revision as of 09:28, 19 May 2011 by Jaime Prilusky (talk | contribs)

Prof Jaime Prilusky, Ph.D.
Head of Bioinformatics
R&D Bioinformatics and Data Management
Weizmann Institute of Science
76100 Rehovot - Israel

email: Jaime.Prilusky@weizmann.ac.il
fax: 972-8-9344113
phone: 972-8-9344959

Links

Selected PublicationsSelected Publications

[xtra 1][xtra 2][xtra 3][xtra 4][xtra 5][xtra 6][xtra 7][xtra 8][xtra 9][xtra 10][xtra 11][xtra 12][xtra 13][xtra 14][xtra 15][xtra 16] [xtra 17] [xtra 18][xtra 19][xtra 20][xtra 21][xtra 22][xtra 23][xtra 24][xtra 25][xtra 26]

  1. ↑ Prilusky J, Hodis E, Canner D, Decatur W, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL. Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules. J Struct Biol. 2011 Apr 23. PMID:21536137 doi:10.1016/j.jsb.2011.04.011
  2. ↑ Hodis E, Prilusky J, Sussman JL. Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function. Biochem Mol Biol Educ. 2010 Sep;38(5):341-2. doi: 10.1002/bmb.20431. PMID:21567857 doi:10.1002/bmb.20431
  3. ↑ Noivirt-Brik O, Prilusky J, Sussman JL. Assessment of disorder predictions in CASP8. Proteins. 2009 Aug 21. PMID:19774619 doi:10.1002/prot.22586
  4. ↑ Ben-David M, Noivirt-Brik O, Paz A, Prilusky J, Sussman JL, Levy Y. Assessment of CASP8 structure predictions for template free targets. Proteins. 2009 Aug 21. PMID:19774550 doi:10.1002/prot.22591
  5. ↑ Prilusky J, Bibi E. Studying membrane proteins through the eyes of the genetic code revealed a strong uracil bias in their coding mRNAs. Proc Natl Acad Sci U S A. 2009 Apr 6. PMID:19366666
  6. ↑ Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules. Genome Biol. 2008;9(8):R121. Epub 2008 Aug 3. PMID:18673581 doi:http://dx.doi.org/10.1186/gb-2008-9-8-r121
  7. ↑ Graslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, Park HW, Savchenko A, Yee A, Edwards A, Vincentelli R, Cambillau C, Kim R, Kim SH, Rao Z, Shi Y, Terwilliger TC, Kim CY, Hung LW, Waldo GS, Peleg Y, Albeck S, Unger T, Dym O, Prilusky J, Sussman JL, Stevens RC, Lesley SA, Wilson IA, Joachimiak A, Collart F, Dementieva I, Donnelly MI, Eschenfeldt WH, Kim Y, Stols L, Wu R, Zhou M, Burley SK, Emtage JS, Sauder JM, Thompson D, Bain K, Luz J, Gheyi T, Zhang F, Atwell S, Almo SC, Bonanno JB, Fiser A, Swaminathan S, Studier FW, Chance MR, Sali A, Acton TB, Xiao R, Zhao L, Ma LC, Hunt JF, Tong L, Cunningham K, Inouye M, Anderson S, Janjua H, Shastry R, Ho CK, Wang D, Wang H, Jiang M, Montelione GT, Stuart DI, Owens RJ, Daenke S, Schutz A, Heinemann U, Yokoyama S, Bussow K, Gunsalus KC. Protein production and purification. Nat Methods. 2008 Feb;5(2):135-46. PMID:18235434 doi:http://dx.doi.org/10.1038/nmeth.f.202
  8. ↑ Tompa P, Prilusky J, Silman I, Sussman JL. Structural disorder serves as a weak signal for intracellular protein degradation. Proteins. 2008 May 1;71(2):903-9. PMID:18004785 doi:http://dx.doi.org/10.1002/prot.21773
  9. ↑ Felder CE, Prilusky J, Silman I, Sussman JL. A server and database for dipole moments of proteins. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W512-21. Epub 2007 May, 25. PMID:17526523 doi:http://dx.doi.org/10.1093/nar/gkm307
  10. ↑ Esnouf RM, Hamer R, Sussman JL, Silman I, Trudgian D, Yang ZR, Prilusky J. Honing the in silico toolkit for detecting protein disorder. Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1260-6. Epub 2006, Sep 19. PMID:17001103 doi:http://dx.doi.org/10.1107/S0907444906033580
  11. ↑ Albeck S, Alzari P, Andreini C, Banci L, Berry IM, Bertini I, Cambillau C, Canard B, Carter L, Cohen SX, Diprose JM, Dym O, Esnouf RM, Felder C, Ferron F, Guillemot F, Hamer R, Ben Jelloul M, Laskowski RA, Laurent T, Longhi S, Lopez R, Luchinat C, Malet H, Mochel T, Morris RJ, Moulinier L, Oinn T, Pajon A, Peleg Y, Perrakis A, Poch O, Prilusky J, Rachedi A, Ripp R, Rosato A, Silman I, Stuart DI, Sussman JL, Thierry JC, Thompson JD, Thornton JM, Unger T, Vaughan B, Vranken W, Watson JD, Whamond G, Henrick K. SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1184-95. Epub 2006, Sep 19. PMID:17001095 doi:http://dx.doi.org/10.1107/S090744490602991X
  12. ↑ Albeck S, Burstein Y, Dym O, Jacobovitch Y, Levi N, Meged R, Michael Y, Peleg Y, Prilusky J, Schreiber G, Silman I, Unger T, Sussman JL. Three-dimensional structure determination of proteins related to human health in their functional context at The Israel Structural Proteomics Center (ISPC). This paper was presented at ICCBM10. Acta Crystallogr D Biol Crystallogr. 2005 Oct;61(Pt 10):1364-72. Epub 2005, Sep 28. PMID:16204888 doi:http://dx.doi.org/10.1107/S0907444905023565
  13. ↑ Sobolev V, Eyal E, Gerzon S, Potapov V, Babor M, Prilusky J, Edelman M. SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W39-43. PMID:15980496 doi:http://dx.doi.org/33/suppl_2/W39
  14. ↑ Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, Beckmann JS, Silman I, Sussman JL. FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded. Bioinformatics. 2005 Aug 15;21(16):3435-8. Epub 2005 Jun 14. PMID:15955783 doi:http://dx.doi.org/10.1093/bioinformatics/bti537
  15. ↑ Prilusky J, Oueillet E, Ulryck N, Pajon A, Bernauer J, Krimm I, Quevillon-Cheruel S, Leulliot N, Graille M, Liger D, Tresaugues L, Sussman JL, Janin J, van Tilbeurgh H, Poupon A. HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories. Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):671-8. Epub 2005, May 26. PMID:15930618 doi:http://dx.doi.org/10.1107/S0907444905001290
  16. ↑ Jaakola VP, Prilusky J, Sussman JL, Goldman A. G protein-coupled receptors show unusual patterns of intrinsic unfolding. Protein Eng Des Sel. 2005 Feb;18(2):103-10. Epub 2005 Mar 24. PMID:15790574 doi:10.1093/protein/gzi004
  17. ↑ Prilusky J, (2004) Protein structure visualisation , BRIEFINGS IN BIOINFORMATICS, 5:89-90, doi:10.1093/bib/5.1.89
  18. ↑ Lin D, Manning NO, Jiang J, Abola EE, Stampf D, Prilusky J, Sussman JL. AutoDep: a web-based system for deposition and validation of macromolecular structural -information. Acta Crystallogr D Biol Crystallogr. 2000 Jul;56(Pt 7):828-41. PMID:10930830
  19. ↑ Sussman JL, Abola EE, Lin D, Jiang J, Manning NO, Prilusky J. The protein data bank. Bridging the gap between the sequence and 3D structure world. Genetica. 1999;106(1-2):149-58. PMID:10710721
  20. ↑ Sobolev V, Sorokine A, Prilusky J, Abola EE, Edelman M. Automated analysis of interatomic contacts in proteins. Bioinformatics. 1999 Apr;15(4):327-32. PMID:10320401
  21. ↑ Sussman JL, Lin D, Jiang J, Manning NO, Prilusky J, Ritter O, Abola EE. Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules. Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 1):1078-84. PMID:10089483
  22. ↑ Rebhan M, Chalifa-Caspi V, Prilusky J, Lancet D. GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support. Bioinformatics. 1998;14(8):656-64. PMID:9789091
  23. ↑ Rebhan M, Prilusky J. Rapid access to biomedical knowledge with GeneCards and HotMolecBase: implications for the electrophoretic analysis of large sets of gene products. Electrophoresis. 1997 Dec;18(15):2774-80. PMID:9504809 doi:10.1002/elps.1150181511
  24. ↑ Rebhan M, Chalifa-Caspi V, Prilusky J, Lancet D. GeneCards: integrating information about genes, proteins and diseases. Trends Genet. 1997 Apr;13(4):163. PMID:9097728
  25. ↑ Abola EE, Sussman JL, Prilusky J, Manning NO. Protein Data Bank archives of three-dimensional macromolecular structures. Methods Enzymol. 1997;277:556-71. PMID:9379928
  26. ↑ Prilusky J. Computers in biology: the future is today. Arch Biol Med Exp (Santiago). 1986;19(3-4):323-8. PMID:8816081
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