7e36

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A [6+4]-cycloaddition adduct is the biosynthetic intermediate in streptoseomycin biosynthesisA [6+4]-cycloaddition adduct is the biosynthetic intermediate in streptoseomycin biosynthesis

Structural highlights

7e36 is a 2 chain structure with sequence from Nocardia tenerifensis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:, , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A318JWT9_9NOCA

Publication Abstract from PubMed

Streptoseomycin (STM, 1) is a bacterial macrolactone that has a unique 5/14/10/6/6-pentacyclic ring with an ether bridge. We have previously identified the biosynthetic gene cluster for 1 and characterized StmD as [6 + 4]- and [4 + 2]-bispericyclase that catalyze a reaction leading to both 6/10/6- and 10/6/6-tricyclic adducts (6 and 7). The remaining steps, especially how to install and stabilize the required 10/6/6-tricyclic core for downstream modifications, remain unknown. In this work, we have identified three oxidoreductases that fix the required 10/6/6-tryciclic core. A pair of flavin-dependent oxidoreductases, StmO1 and StmO2, catalyze the direct hydroxylation at [6 + 4]-adduct (6). Subsequently, a spontaneous [3,3]-Cope rearrangement and an enol-ketone tautomerization result in the formation of 10/6/6-tricyclic intermediate 12b, which can be further converted to a stable 10/6/6-tricyclic alcohol 11 through a ketoreduction by StmK. Crystal structure of the heterodimeric complex NtfO1-NtfO2, homologues of StmO1-StmO2 with equivalent function, reveals protein-protein interactions. Our results demonstrate that the [6 + 4]-adduct instead of [4 + 2]-adduct is the bona fide biosynthetic intermediate.

A [6+4]-cycloaddition adduct is the biosynthetic intermediate in streptoseomycin biosynthesis.,Wang KB, Wang W, Zhang B, Wang X, Chen Y, Zhu HJ, Liang Y, Tan RX, Ge HM Nat Commun. 2021 Apr 7;12(1):2092. doi: 10.1038/s41467-021-22395-7. PMID:33828077[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Wang KB, Wang W, Zhang B, Wang X, Chen Y, Zhu HJ, Liang Y, Tan RX, Ge HM. A [6+4]-cycloaddition adduct is the biosynthetic intermediate in streptoseomycin biosynthesis. Nat Commun. 2021 Apr 7;12(1):2092. PMID:33828077 doi:10.1038/s41467-021-22395-7

7e36, resolution 2.00Å

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OCA