FunctionCytochrome c nitrite reductase or cytochrome c552 (ccNiR) catalyzes the reduction of nitrite to ammonia as one of the key steps in the nitrogen cycle where it participates in the anaerobic energy metabolism of dissimilatory nitrate ammonification[1].
See also Hemeproteins: Cytochrome c Nitrite Reductase.
Structural highlightsCytochrome c nitrite reductase with (PDB code 2e80). In the Wolinella succinogenes ccNiR structure the [2]. . Water molecules are shown as red spheres. Rare-earth element .
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3D structures of cytochrome c nitrite reductase3D structures of cytochrome c nitrite reductase
Updated on 18-December-2022
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- Cytochrome c nitrite reductase
- 1qdb – ccNiR – Sulfurospirilum deleyianum
- 1fs7, 1fs8, 1fs9, ]]3bnf]] – WsccNiR – Wolinella succinogenes
- 3bng, 3bnj – WsccNiR (mutant)
- 1gu6, 2rdz, 3l1t, 3tor – EcccNiR – Eschericia coli<br />
- 2rf7, 4wjy – EcccNiR (mutant)
- 6p73 – SoccNiR – Shewanella oneidensis
- 3ubr – SoccNiR - Laue
- 2j7a – DvccNiR – Desulfovibrio vulgaris
- 1oah – ccNiR – Desulfovibrio desulfuricans
- 6v0a – ccNiR – Geobacter lovleyi
- Cytochrome c nitrite reductase complex
- 2e80 – WsccNiR + NO2
- 3bnh – WsccNiR (mutant) + NO2
- 2e81 – WsccNiR + hydroxylamine
- 2vr0 – DvccNiR catalytic subunit + NRFH + quinolone derivative
- Eight-heme nitrite reductase
- 2ot4, 2zo5, 3f29, 3gm6, 3mmo, 3ttb, 3uu9, 3fo3, 3lg1, 3lgq, 3sce, 4l3x, 4l3y, 4l3z, 4q0t, 4q17, 4q1o, 4q4u, 4q5b, 4q5c – TnccNiR – Thioalkalivibrio nitratireducens
- 7o9u – TnccNiR – NMR
- 3owm, 3s7w – TnccNiR + hydroxylamine
- 3d1i, 3rkh – TnccNiR + NO2
- Heme-containing nitrite reductase - (Cytochrome C-552)
- 1aof, 1qks, 1hj4, 1hj5, 1h9x, 1hcm - PpNIR – Paracoccus pantotrophus
- 1gq1 - PpNIR (mutant)
- 1nir, 1bl9, 1n15, 1n50, 1n90, 6rtd, 6rte, 6tpo, 6tsi – PaNIR – Pseudomonas aeruginosa
- 1hzu - PaNIR (mutant)
- 1qdb - NIR – Sulfurospirillum deleyianum
- 1fs7, 1fs8 - WsNIR – Wolinella succinogenes
- 3bng - WsNIR (mutant)
- 1gu6, 2rdz, 3tor – EcNIR – Escherichia coli
- 2rf7, 4wjy - EcNIR (mutant)
- 2jo6 – EcNIR small subunit – NMR
- 2jza - NIR small subunit – Pectobacterium atrosepticum - NMR
- 1oah – NIR – Desulfovibrio desulfuricans
- 2j7a - DvNIR – Desulfovibrio vulgaris
- 2ot4, 3gm6, 3fo3, 3sce, 3uu9, 4q0t, 4q17, 4q1o, 4q4u, 4q5b, 4q5c - TnNIR – Thioalkalivibrio nitratireducens
- 3m97 – PdNIR soluble domain – Paracoccus denitrificans
- 2ai5 – HtNIR – Hydrogenophilus thermophilus – NMR
- 2d0s, 1ynr, 3vym – HtNIR
- 1ayg – NIR - Hydrogenobacter thermoluteolus – NMR
- 1i6d, 1i6e, 1c7m – PdNIR functional domain – NMR
- 1ql3, 1ql4 - PdNIR functional domain
- 1dt1, 1qyz, 1r0q, 1c52, 3vnw – TtNIR – Thermus thermophilus
- 2fwl – TtNIR + NIR oxidase subunit II
- 1cno – NIR – Pseudomonas nautica
- 3ubr, 6p73 – SoNIR – Shewanella oneidensis
- 3sqx – TpNIR – Thioalkalivibrio paradoxus
- 6v0a – NIR – Geobacter lovleyi
- Heme-containing nitrite reductase binary complex
- 1dy7 - PpNIR + CO
- 1hj3 - PpNIR + O2
- 2e81 - WsNIR + NH2OH
- 3bnf - WsNIR + sulfite
- 2vr0 - DvNIR + HQNO inhibitor
- 3ziy, 4ax3, 6fja, 6f1q – RpNIR + Cu – Ralstonia pickettii
- 3ayf – NIR + Zn – Geobacillus stearothermophilus
- 2yqb, 3zbm – RpNIR (mutant) + Cu
- 3o0r – PaNIR + antibody
- 5guw – PaNIR + nitric oxide reductase
- 3sxq – TpNIR + Co
- Heme-containing nitrite reductase binary complex with cyanide
- Heme-containing nitrite reductase binary complex with nitric oxide
- Heme-containing nitrite reductase binary complex with nitrite
- Heme-containing nitrite reductase binary complex with azide
- Heme-containing nitrite reductase binary complex with sulfite
ReferencesReferences
- ↑ Einsle O, Messerschmidt A, Stach P, Bourenkov GP, Bartunik HD, Huber R, Kroneck PM. Structure of cytochrome c nitrite reductase. Nature. 1999 Jul 29;400(6743):476-80. PMID:10440380 doi:10.1038/22802
- ↑ Einsle O, Messerschmidt A, Huber R, Kroneck PM, Neese F. Mechanism of the six-electron reduction of nitrite to ammonia by cytochrome c nitrite reductase. J Am Chem Soc. 2002 Oct 2;124(39):11737-45. PMID:12296741