6f5d

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Trypanosoma brucei F1-ATPaseTrypanosoma brucei F1-ATPase

Structural highlights

6f5d is a 12 chain structure with sequence from Trypanosoma brucei brucei. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Activity:H(+)-transporting two-sector ATPase, with EC number 3.6.3.14
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[ATP18_TRYBB] Mitochondrial membrane ATP synthase (F(1)F(o) ATP synthase) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain (PubMed:19436713, PubMed:29247468). F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(o) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk (PubMed:19436713, PubMed:29247468, PubMed:29440423). During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1) (PubMed:19436713, PubMed:29440423). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits (Probable). Contrary to the procyclic, insect form that requires F(1)F(o) ATP synthase for ATP synthesis, the bloodstream form relies on ATP hydrolysis by F(1)F(o) ATP synthase to maintain its mitochondrial membrane potential (PubMed:29247468).[1] [2] [3] [ATPD_TRYBB] Mitochondrial membrane ATP synthase (F(1)F(o) ATP synthase) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain (PubMed:19436713, PubMed:29247468). F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(o) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk (PubMed:19436713, PubMed:29247468, PubMed:29440423). During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1) (PubMed:19436713, PubMed:29440423). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits (Probable). Contrary to the procyclic, insect form that requires F(1)F(o) ATP synthase for ATP synthesis, the bloodstream form relies on ATP hydrolysis by F(1)F(o) ATP synthase to maintain its mitochondrial membrane potential (PubMed:29247468).[4] [5] [6] [ATPA_TRYBB] Mitochondrial membrane ATP synthase (F(1)F(o) ATP synthase) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain (PubMed:19436713, PubMed:29247468). F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(o) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk (PubMed:19436713, PubMed:29247468, PubMed:29440423). During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1) (PubMed:19436713, PubMed:29440423). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits (Probable). Subunit alpha does not bear the catalytic high-affinity ATP-binding sites (PubMed:29440423). Contrary to the procyclic, insect form that requires F(1)F(o) ATP synthase for ATP synthesis, the bloodstream form relies on ATP hydrolysis by F(1)F(o) ATP synthase to maintain its mitochondrial membrane potential (PubMed:29247468).[7] [8] [9] [ATPB_TRYBB] Mitochondrial membrane ATP synthase (F(1)F(o) ATP synthase) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain (PubMed:19436713, PubMed:29247468). F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(o) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk (PubMed:19436713, PubMed:29247468, PubMed:29440423). During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1) (PubMed:19436713, PubMed:29440423). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits (Probable). Contrary to the procyclic, insect form that requires F(1)F(o) ATP synthase for ATP synthesis, the bloodstream form relies on ATP hydrolysis by F(1)F(o) ATP synthase to maintain its mitochondrial membrane potential (PubMed:29247468).[10] [11] [12] [ATP5E_TRYBB] Mitochondrial membrane ATP synthase (F(1)F(o) ATP synthase) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain (PubMed:19436713, PubMed:29247468). F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(o) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk (PubMed:19436713, PubMed:29247468, PubMed:29440423). During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1) (PubMed:19436713, PubMed:29440423). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits (Probable). Contrary to the procyclic, insect form that requires F(1)F(o) ATP synthase for ATP synthesis, the bloodstream form relies on ATP hydrolysis by F(1)F(o) ATP synthase to maintain its mitochondrial membrane potential (PubMed:29247468).[13] [14] [15]

Publication Abstract from PubMed

The structures and functions of the components of ATP synthases, especially those subunits involved directly in the catalytic formation of ATP, are widely conserved in metazoans, fungi, eubacteria, and plant chloroplasts. On the basis of a map at 32.5-A resolution determined in situ in the mitochondria of Trypanosoma brucei by electron cryotomography, it has been proposed that the ATP synthase in this species has a noncanonical structure and different catalytic sites in which the catalytically essential arginine finger is provided not by the alpha-subunit adjacent to the catalytic nucleotide-binding site as in all species investigated to date, but rather by a protein, p18, found only in the euglenozoa. A crystal structure at 3.2-A resolution of the catalytic domain of the same enzyme demonstrates that this proposal is incorrect. In many respects, the structure is similar to the structures of F1-ATPases determined previously. The alpha3beta3-spherical portion of the catalytic domain in which the three catalytic sites are found, plus the central stalk, are highly conserved, and the arginine finger is provided conventionally by the alpha-subunits adjacent to each of the three catalytic sites found in the beta-subunits. Thus, the enzyme has a conventional catalytic mechanism. The structure differs from previous described structures by the presence of a p18 subunit, identified only in the euglenozoa, associated with the external surface of each of the three alpha-subunits, thereby elaborating the F1-domain. Subunit p18 is a pentatricopeptide repeat (PPR) protein with three PPRs and appears to have no function in the catalytic mechanism of the enzyme.

ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites.,Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423[16]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Zikova A, Schnaufer A, Dalley RA, Panigrahi AK, Stuart KD. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009 May;5(5):e1000436. doi: 10.1371/journal.ppat.1000436. Epub 2009, May 15. PMID:19436713 doi:http://dx.doi.org/10.1371/journal.ppat.1000436
  2. Gahura O, Subrtova K, Vachova H, Panicucci B, Fearnley IM, Harbour ME, Walker JE, Zikova A. The F1 -ATPase from Trypanosoma brucei is elaborated by three copies of an additional p18-subunit. FEBS J. 2018 Feb;285(3):614-628. doi: 10.1111/febs.14364. Epub 2017 Dec 30. PMID:29247468 doi:http://dx.doi.org/10.1111/febs.14364
  3. Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE. ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423 doi:http://dx.doi.org/10.1073/pnas.1720940115
  4. Zikova A, Schnaufer A, Dalley RA, Panigrahi AK, Stuart KD. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009 May;5(5):e1000436. doi: 10.1371/journal.ppat.1000436. Epub 2009, May 15. PMID:19436713 doi:http://dx.doi.org/10.1371/journal.ppat.1000436
  5. Gahura O, Subrtova K, Vachova H, Panicucci B, Fearnley IM, Harbour ME, Walker JE, Zikova A. The F1 -ATPase from Trypanosoma brucei is elaborated by three copies of an additional p18-subunit. FEBS J. 2018 Feb;285(3):614-628. doi: 10.1111/febs.14364. Epub 2017 Dec 30. PMID:29247468 doi:http://dx.doi.org/10.1111/febs.14364
  6. Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE. ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423 doi:http://dx.doi.org/10.1073/pnas.1720940115
  7. Zikova A, Schnaufer A, Dalley RA, Panigrahi AK, Stuart KD. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009 May;5(5):e1000436. doi: 10.1371/journal.ppat.1000436. Epub 2009, May 15. PMID:19436713 doi:http://dx.doi.org/10.1371/journal.ppat.1000436
  8. Gahura O, Subrtova K, Vachova H, Panicucci B, Fearnley IM, Harbour ME, Walker JE, Zikova A. The F1 -ATPase from Trypanosoma brucei is elaborated by three copies of an additional p18-subunit. FEBS J. 2018 Feb;285(3):614-628. doi: 10.1111/febs.14364. Epub 2017 Dec 30. PMID:29247468 doi:http://dx.doi.org/10.1111/febs.14364
  9. Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE. ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423 doi:http://dx.doi.org/10.1073/pnas.1720940115
  10. Zikova A, Schnaufer A, Dalley RA, Panigrahi AK, Stuart KD. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009 May;5(5):e1000436. doi: 10.1371/journal.ppat.1000436. Epub 2009, May 15. PMID:19436713 doi:http://dx.doi.org/10.1371/journal.ppat.1000436
  11. Gahura O, Subrtova K, Vachova H, Panicucci B, Fearnley IM, Harbour ME, Walker JE, Zikova A. The F1 -ATPase from Trypanosoma brucei is elaborated by three copies of an additional p18-subunit. FEBS J. 2018 Feb;285(3):614-628. doi: 10.1111/febs.14364. Epub 2017 Dec 30. PMID:29247468 doi:http://dx.doi.org/10.1111/febs.14364
  12. Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE. ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423 doi:http://dx.doi.org/10.1073/pnas.1720940115
  13. Zikova A, Schnaufer A, Dalley RA, Panigrahi AK, Stuart KD. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009 May;5(5):e1000436. doi: 10.1371/journal.ppat.1000436. Epub 2009, May 15. PMID:19436713 doi:http://dx.doi.org/10.1371/journal.ppat.1000436
  14. Gahura O, Subrtova K, Vachova H, Panicucci B, Fearnley IM, Harbour ME, Walker JE, Zikova A. The F1 -ATPase from Trypanosoma brucei is elaborated by three copies of an additional p18-subunit. FEBS J. 2018 Feb;285(3):614-628. doi: 10.1111/febs.14364. Epub 2017 Dec 30. PMID:29247468 doi:http://dx.doi.org/10.1111/febs.14364
  15. Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE. ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423 doi:http://dx.doi.org/10.1073/pnas.1720940115
  16. Montgomery MG, Gahura O, Leslie AGW, Zikova A, Walker JE. ATP synthase from Trypanosoma brucei has an elaborated canonical F1-domain and conventional catalytic sites. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):2102-2107. doi:, 10.1073/pnas.1720940115. Epub 2018 Feb 12. PMID:29440423 doi:http://dx.doi.org/10.1073/pnas.1720940115

6f5d, resolution 3.20Å

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