6e40

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Crystal structure of the indoleamine 2,3-dioxygenase 1 (IDO1) in complexed with ferric heme and EpacadostatCrystal structure of the indoleamine 2,3-dioxygenase 1 (IDO1) in complexed with ferric heme and Epacadostat

Structural highlights

6e40 is a 4 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Activity:Indoleamine 2,3-dioxygenase, with EC number 1.13.11.52
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[I23O1_HUMAN] Catalyzes the cleavage of the pyrrol ring of tryptophan and incorporates both atoms of a molecule of oxygen.[1]

Publication Abstract from PubMed

Human indoleamine 2,3-dioxygenase 1 (IDO1) is a heme-dependent enzyme with important roles in many cellular processes and is a potential target for drug discovery against cancer and other diseases. Crystal structures of IDO1 in complex with various inhibitors have been reported. Many of these crystals belong to the same crystal form and most of the reported structures have resolutions in the range 3.2-2.3 A. Here, three new crystal forms of human IDO1 obtained by introducing a surface mutation, K116A/K117A, distant from the active site are reported. One of these crystal forms diffracted to 1.5 A resolution and can be readily used for soaking experiments to determine high-resolution structures of IDO1 in complex with the substrate tryptophan or inhibitors that coordinate the heme. In addition, this mutant was used to produce crystals of a complex with an inhibitor that targets the apo form of the enzyme under the same conditions; the structure of this complex was determined at 1.7 A resolution. Overall, this mutant represents a robust platform for determining the structures of inhibitor and substrate complexes of IDO1 at high resolution.

High-resolution structures of inhibitor complexes of human indoleamine 2,3-dioxygenase 1 in a new crystal form.,Luo S, Xu K, Xiang S, Chen J, Chen C, Guo C, Tong Y, Tong L Acta Crystallogr F Struct Biol Commun. 2018 Nov 1;74(Pt 11):717-724. doi:, 10.1107/S2053230X18012955. Epub 2018 Oct 17. PMID:30387777[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Metz R, Duhadaway JB, Kamasani U, Laury-Kleintop L, Muller AJ, Prendergast GC. Novel tryptophan catabolic enzyme IDO2 is the preferred biochemical target of the antitumor indoleamine 2,3-dioxygenase inhibitory compound D-1-methyl-tryptophan. Cancer Res. 2007 Aug 1;67(15):7082-7. PMID:17671174 doi:http://dx.doi.org/10.1158/0008-5472.CAN-07-1872
  2. Luo S, Xu K, Xiang S, Chen J, Chen C, Guo C, Tong Y, Tong L. High-resolution structures of inhibitor complexes of human indoleamine 2,3-dioxygenase 1 in a new crystal form. Acta Crystallogr F Struct Biol Commun. 2018 Nov 1;74(Pt 11):717-724. doi:, 10.1107/S2053230X18012955. Epub 2018 Oct 17. PMID:30387777 doi:http://dx.doi.org/10.1107/S2053230X18012955

6e40, resolution 2.31Å

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