Sigma factor 3D structures

3D structures of sigma factor3D structures of sigma factor

Updated on 01-April-2020

{"openlevels":0}

• Sigma factor
  • 1ku2 – TaSFA region 1.2-3.1 – Thermus aquaticus
    
  • 1ku3 – TaSFA region 4 (mutant)
    
  • 3les – TaSFA residues 93-271
    
  • 1sig – EcSF70 – Escherichia coli
    
  • 2mao – EcSFE region 2 - NMR
    
  • 6fi7 – EcSF38 - NMR
    
  • 1tty – TmSF70 region 4 – Thermotoga maritima
    
  • 2k6x – TmSF70 region 1.1 (mutant) - NMR
    
  • 2ahq – AaSF54 C terminal – Aquifex aeolicus - NMR
    
  • 2k9l, 2k9m – AaSF54 core domain - NMR
    
  • 3mzy – SFH – Fusobacterium nucleatum
    
  • 1h3l – ScSF N terminal – Streptomyces coelicolor
    
  • 5fgm – ScSFR region 4
    
  • 5mww – BsSFA region 1.1 - Bacillus subtilis - NMR
    
  • 5xe7 – MtSFJ – Mycobacterium tuberculosis
    
• Sigma factor complex with DNA
  • 3ugo, 3ugp - TaSFA region 2 + DNA
    
  • 1ku7 – TaSFA region 4 (mutant) + DNA
    
  • 4ki2 - TaSFA region 2-3 + DNA
    
  • 2h27 – EcSFE region 4 + DNA
    
  • 2map – EcSFE region 2 + DNA - NMR
    
  • 2o8k, 2o9l – AaS54 C terminal + DNA - NMR
    
  • 5ui5 – AaSF54 residues 61-398 + DNA
    
  • 6jhe – BsSFW region 4 + DNA
    
• Sigma factor complex with anti-sigma factor
  • 1tlh – EcSF70 region 4 + anti-σ factor
    
  • 1rp3, 1sc5 – AaSF28 + anti-σ factor FLGM
    
  • 6ivu – SF1 + anti-σ factor – Clostridium thermocellum
    
  • 5wur – BsSFW + anti-σ factor
    
  • 5uxx – SF + anti-σ factor – Bartonella quintana
    
  • 4nqw – MtSFK region 4 + anti-σ factor
    
• Sigma factor complex with protein
  • 3lev – TaSFA residues 93-271 + antibody
    
  • 1l9u – TaSFA region 1.1-4 + RNAP subunits α,β,β’,ω
    
  • 1or7 – EcSFE + σ-E factor negative regulatory protein
    
  • 4lup – EcSFE residues 3-92 + EcSF region 2
    
  • 2p7v – EcSF70 region 4 + regulator of σ D
    
  • 4yg2, 5uag, 5uaj, 5uaq – EcSF70 + RNAP subunits α,β,β’,ω
    
  • 5ui8 – EcSF45 + RNAP subunits α,β,β’,ω
    
  • 4mex, 4kmu, 4kn4, 4kn7, 5uac, 5uah, 5ual, 4zh3, 4zh4 – EcSF70 + RNAP subunits α,β,β’,ω + antibiotic
    
  • 4xsx, 4xsy, 4xsz – EcSF70 + RNAP subunits α,β,β’,ω + antibiotic
    
  • 6byu – EcSF70 + RNAP subunits α,β,β’,ω + ppApp
    
  • 4mey, 4ljz, 4lk1, 6cux – EcSF70 + RNAP subunits α,β,β’,ω
    
  • 6c9y, 6ca0 – EcSF70 + RNAP subunits α,β,β’,ω - Cryo EM
    
  • 5byh – EcSF45 + RNAP subunits α,β,β’,ω
    
  • 5nwt – EcSF54 + RNAP subunits α,β,β’,ω
    
  • 5w1s – EcSF70 + RNAP subunits α,β,β’ + TraR
    
  • 5vsw – EcSF70 + RNAP subunits α,β,β’ + DnaK suppressor protein
    
  • 5w1t – EcSF70 + RNAP subunits α,β,β’ + RpoZ + DnaK suppressor protein
    
  • 4lk0, 4llg, 4yfk, 4yfn, 4yfx, 4zh2 – EcSF70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor
    
  • 3hug – MtSFL + membrane protein
    
  • 4x8k – MtSFA region 2 + RBPA
    
  • 6onu, 6ono – MtSFA region 4 + WHIB1
    
  • 5zx3 – MtSFH + RNAP subunits α,β,β’,ω
    
  • 6fbv – MtSFA + RNAP subunits α,β,β’,ω - SP Cryo EM
    
  • 6c05, 6c06 – MtSFA + RNAP subunits α,β,β’,ω + RbpA - Cryo EM
    
  • 3wod, 2a6e, 2cw0, 5tmf – TtSFA + RNAP subunits α,β,β’,ω - Thermus thermophilus
    
  • 4mq9, 2a68, 2a69, 2a6h, 3dxj, 3eql – TtSF70 + RNAP subunits α,β,β’,ω + antibiotic
    
  • 2be5 – TtSF70 + RNAP subunits α,β,β’,ω + inhibitor
    
  • 6pfj, 6pfv – ScSF (mutant) + AMFC protein
    
  • 5tmc – TtSFA + RNAP subunits α,β,β’,ω + protein + G4P
    
  • 5xj0 – TtSFA + RNAP subunits α,β,β’,ω + GP39 + GP76
    
  • 5x22 – TtSFA + RNAP subunits α,β,β’,ω + GpA + CMPcPP
    
  • 4lk0, 4llg, 4yfk, 4yfn, 4yfx, 4zh2 – EcSF70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor
    
  • 4cxf – SF CNRH + CNRY – Cupriavidus metallidurans
    
  • 4g6d, 4g8x, 4g94 – SF70 region 4 + Orf067 – Staphylococcus aureus
    
  • 5yix – SF70 + GCRA - Caulobacter crescentus
    
  • 6in7 – SFH + ALGU – Pseudomonas aeruginosa
    
  • 6eyd – SFA + RNAP subunits α,β,β’,ω - Mycobacterium smegmatis – Cryo EM
    
  • 6dxo – SFA + BLDN – Streptomyces venezuelae
    
• Sigma factor complex with protein and DNA and RNA
  • 4oio, 4g7h, 4g7o, 4g7z, 4q4z, 4q5s – TtSFA + RNAP subunits α,β,β’,ω + DNA
    
  • 1smy – TtSF + RNAP subunits α,β,β’,ω + G4P
    
  • 6p71, 6p70, 6oy7, 6oy6, 6oy5, 6ow3, 6ovy, 6ovr – TtSFA + RNAP subunits α,β,β’,ω + DNA + RNA
    
  • 5voi – TtSFA + TtRNAP subunits α,β,β’,ω + DNA
    
  • 5d4c – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + CTP + ATP
    
  • 5d4d – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + CTP + NAD
    
  • 5d4e – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + CTP + dephosphate-CoA
    
  • 3n97 – TaSFA region 4 + RNAP subunits α + DNA
    
  • 4xlp, 4xlq, 5tjg – TaSFA + RNAP subunits α,β,β’,ω + DNA
    
  • 1l9z – TaSFA + RNAP subunits α,β,β’,ω + DNA – Cryo EM
    
  • 4xlr, 4xls – TaSFA + RNAP subunits α,β,β’,ω + CarD-like transcriptional regulator + DNA
    
  • 1rio - TaSFA region 4 + repression protein CI + DNA
    
  • 3iyd – EcSF70 + EcRNAP subunits α,β,β’,ω + catabolite gene activator + DNA
    
  • 4jk1, 4jk2, 4jkr – EcSF70 + EcRNAP subunits α,β,β’,ω + G4P
    
  • 4yln, 4ylo, 4ylp, 6n62 – EcSF70 + EcRNAP subunits α,β,β’,ω + DNA
    
  • 5nss – EcSF54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM
    
  • 5nsr, 6gh6, 6gh5, 6gfw – EcSF54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM
    
  • 6n61 – EcSF70 + EcRNAP subunits α,β,β’,ω + capistruin + DNA
    
  • 6n60 – EcSF70 + EcRNAP subunits α,β,β’,ω + microcin + DNA
    
  • 6p18 – EcSF70 + EcRNAP subunits α,β,β’,ω + protein Q + DNA + RNA
    
  • 6jnx – EcSF70 + EcRNAP subunits α,β,β’,ω + protein Q + DNA + RNA – Cryo EM
    
  • 6jbq – EcSFE + EcRNAP subunits α,β,β’,ω + DNA + RNA – Cryo EM
    
  • 5vt0 – EcSF70 + EcRNAP subunits α,β,β’,ω + RNA – Cryo EM
    
  • 6k4y – EcSF70 + EcRNAP subunits α,β,β’,ω + anti-SF + MOTA + DNA – Cryo EM
    
  • 6dcf – MtSFA + RNAP subunits α,β,β’,ω + RBPA + DNA
    
  • 6m7j – MtSFA + RNAP subunits α,β,β’,ω + RBPA + DNA – Cryo EM
    
  • 6eec, 6ee8, 6edt – MtSFA + RNAP subunits α,β,β’,ω + RBPA + CARD + DNA – Cryo EM
    
  • 6jcy, 6jcx – MtSFH + RNAP subunits α,β,β’,ω + DNA + RNA
    
  • 6dve, 6dvd – MtSFL + RNAP subunits α,β,β’,ω + DNA
    
  • 5zx2 – MtSFH + RNAP subunits α,β,β’,ω + DNA + RNA
    
  • 6dvc, 6dvb, 6dv9 – MtSFL + RNAP subunits α,β,β’,ω + DNA + RNA
    
  • 5uha – MtSFA + MtRNAP subunits α,β,β’,ω + DNA
    
  • 6c04 – MtSFA + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM
    
  • 5uhe, 5uhf – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + inhibitor
    
  • 5tw1, 6cce – MsSFA + MtRNAP subunits α,β,β’,ω + DNA + peptide - Mycobacterium smegmatis
    
  • 5vi8 – MsSFA + MsRNAP subunits α,β,β’,ω + DNA
    
  • 6ccv – MsSFA + MtRNAP subunits α,β,β’,ω + DNA + peptide + RbpA
    
• Sigma factor complex with protein and DNA and antibiotics
  • 4oin, 4oip, 4oiq, 4oir – TtSFA + RNAP subunits α,β,β’,ω + antibiotic + DNA
    
  • 6cuu – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + antibiotic
    
  • 5uhg – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + antibiotic + inhibitor
    
  • 5uhb – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + antibiotic
    
  • 6bzo – MtSFA + RNAP subunits α,β,β’,ω + RbpA + DNA + antibiotic - Cryo EM
    
  • 6ccf – MsSFA + MtRNAP subunits α,β,β’,ω + DNA + peptide + antibiotic
    
• Sigma factor complex with protein, DNA and RNA
  • 5vi5 – MsSFA + MsRNAP subunits α,β,β’,ω + RbpA + DNA + RNA
    
  • 4xln – TaSFA + RNAP subunits α,β,β’,ω + DNA + RNA
    
  • 5ipl, 5ipm, 5ipn – EcSF38 + EcRNAP subunits α,β,β’,ω + DNA + RNA
    
  • 6b6h – EcSF70 + EcRNAP subunits α,β,β’,ω + DNA + RNA - Cryo EM
    
  • 5e17, 5e18 – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA
    
  • 5x22 – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + CMPPP
    
  • 5vo8 – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + GTP
    
  • 5x21 – TtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic
    
  • 5i2d – TtSFA + TtRNAP subunits α,β,β’,ω + transcriptional regulator + DNA + RNA
    
  • 5uh5, 5uh8, 5uh9 – MtSFA + MtRNAP subunits α,β,β’,ω + DNA + RNA
    
  • 5uh6, 5uhc, 5uhd, 5x21 – MtSFA + TtRNAP subunits α,β,β’,ω + DNA + RNA + antibiotic