3vay

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Crystal structure of 2-Haloacid Dehalogenase from Pseudomonas syringae pv. Tomato DC3000Crystal structure of 2-Haloacid Dehalogenase from Pseudomonas syringae pv. Tomato DC3000

Structural highlights

3vay is a 2 chain structure with sequence from Pseudomonas syringae pv. tomato str. dc3000. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Gene:PSPTO_0221 (Pseudomonas syringae pv. tomato str. DC3000)
Resources:FirstGlance, OCA, RCSB, PDBsum

Publication Abstract from PubMed

2-Haloacid dehalogenases (2-HADs) catalyse the hydrolytic dehalogenation of 2-haloalkanoic acids, cleaving the carbon-halide bond at the C(alpha)-atom position and releasing a halogen atom. These enzymes are of interest for their potential use in bioremediation and in the synthesis of industrial chemicals. Here, the crystal structure of 2-HAD from Pseudomonas syringae pv. tomato DC3000 (ps-2-HAD) at 1.98 A resolution solved using the single-wavelength anomalous dispersion method is reported. The ps-2-HAD molecule consists of two structurally distinct domains: the core domain and the subdomain. Enzymatic activity analysis of ps-2-HAD revealed its capacity to catalyse the dehalogenation of both L- and D-substrates; however, the structure of ps-2-HAD is completely different from that of DehI, which is the only DL-2-HAD enzyme that has been structurally characterized, but shows similar overall folding to L-HADs. Single mutations of four amino-acid residues at the putative active site showed that they are related to its enzymatic activity, yet three of them are nonconserved among HADs. These observations imply that ps-2-HAD has a novel active site and a unique catalytic behaviour compared with other HADs. This study provides a structural basis and biochemical evidence for further elucidation of the catalytic mechanism of 2-HAD.

Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000.,Hou Z, Zhang H, Li M, Chang W Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1108-14. doi:, 10.1107/S0907444913006021. Epub 2013 May 15. PMID:23695255[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Hou Z, Zhang H, Li M, Chang W. Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000. Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1108-14. doi:, 10.1107/S0907444913006021. Epub 2013 May 15. PMID:23695255 doi:10.1107/S0907444913006021

3vay, resolution 1.98Å

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