Yeast F1 ATPase in the absence of bound nucleotidesYeast F1 ATPase in the absence of bound nucleotides

Structural highlights

3fks is a 27 chain structure with sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Related:2hld, 1w0j
Gene:ATP2, J2041, YJR121W (Saccharomyces cerevisiae)
Activity:H(+)-transporting two-sector ATPase, with EC number 3.6.3.14
Resources:FirstGlance, OCA, RCSB, PDBsum

Evolutionary Conservation

 

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The crystal structure of nucleotide-free yeast F(1) ATPase has been determined at a resolution of 3.6 A. The overall structure is very similar to that of the ground state enzyme. In particular, the beta(DP) and beta(TP) subunits both adopt the closed conformation found in the ground state structure despite the absence of bound nucleotides. This implies that interactions between the gamma and beta subunits are as important as nucleotide occupancy in determining the conformational state of the beta subunits. Furthermore, this result suggests that for the mitochondrial enzyme, there is no state of nucleotide occupancy that would result in more than one of the beta subunits adopting the open conformation. The adenine-binding pocket of the beta(TP) subunit is disrupted in the apoenzyme, suggesting that the beta(DP) subunit is responsible for unisite catalytic activity.

Asymmetric structure of the yeast F1 ATPase in the absence of bound nucleotides.,Kabaleeswaran V, Shen H, Symersky J, Walker JE, Leslie AG, Mueller DM J Biol Chem. 2009 Apr 17;284(16):10546-51. Epub 2009 Feb 20. PMID:19233840[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Kabaleeswaran V, Shen H, Symersky J, Walker JE, Leslie AG, Mueller DM. Asymmetric structure of the yeast F1 ATPase in the absence of bound nucleotides. J Biol Chem. 2009 Apr 17;284(16):10546-51. Epub 2009 Feb 20. PMID:19233840 doi:10.1074/jbc.M900544200

3fks, resolution 3.59Å

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